RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 TPM4P67936 248 aa14.71□□□□□ -0.05
LIG1-201ENST00000263274 LLPHQ9BRT6 129 aaKnown RBP14.71□□□□□ -0.05
LIG1-201ENST00000263274 DPCR1Q3MIW9 517 aa14.71□□□□□ -0.06
LIG1-201ENST00000263274 ZNF213O14771 459 aa14.7□□□□□ -0.06
LIG1-201ENST00000263274 SPTLC2O15270 562 aa14.7□□□□□ -0.06
LIG1-201ENST00000263274 ZMYM1Q5SVZ6 1142 aa14.7□□□□□ -0.06
LIG1-201ENST00000263274 MICU3Q86XE3 530 aa14.7□□□□□ -0.06
LIG1-201ENST00000263274 SMARCC2Q8TAQ2 1214 aa14.7□□□□□ -0.06
LIG1-201ENST00000263274 AIFM3Q96NN9 605 aa14.7□□□□□ -0.06
LIG1-201ENST00000263274 ALDH8A1Q9H2A2 487 aaPredicted RBP14.7□□□□□ -0.06
LIG1-201ENST00000263274 ZNF215Q9UL58 517 aaPredicted RBP14.7□□□□□ -0.06
LIG1-201ENST00000263274 NBPF26B4DH59 902 aa14.7□□□□□ -0.06
LIG1-201ENST00000263274 ZAP70P43403 619 aa14.7□□□□□ -0.06
LIG1-201ENST00000263274 NBPF14Q5TI25 921 aa14.7□□□□□ -0.06
LIG1-201ENST00000263274 NBPF10Q6P3W6 841 aaKnown RBP14.7□□□□□ -0.06
LIG1-201ENST00000263274 ATG9AQ7Z3C6 839 aa14.7□□□□□ -0.06
LIG1-201ENST00000263274 NBPF15Q8N660 670 aa14.7□□□□□ -0.06
LIG1-201ENST00000263274 TMX1Q9H3N1 280 aa14.7□□□□□ -0.06
LIG1-201ENST00000263274 PAXBP1Q9Y5B6 917 aa14.7□□□□□ -0.06
LIG1-201ENST00000263274 LRRC37A3O60309 1634 aa14.7□□□□□ -0.06
LIG1-201ENST00000263274 RGPD2P0DJD1 1756 aa14.7□□□□□ -0.06
LIG1-201ENST00000263274 FGAP02671 866 aa14.7□□□□□ -0.06
LIG1-201ENST00000263274 ADD1P35611 737 aaKnown RBP14.7□□□□□ -0.06
LIG1-201ENST00000263274 RRP12Q5JTH9 1297 aaKnown RBP14.7□□□□□ -0.06
LIG1-201ENST00000263274 DSCC1Q9BVC3 393 aa14.7□□□□□ -0.06
LIG1-201ENST00000263274 TUBGCP6Q96RT7 1819 aa14.7□□□□□ -0.06
LIG1-201ENST00000263274 CAVIN2O95810 425 aa14.69□□□□□ -0.06
LIG1-201ENST00000263274 SERPINC1P01008 464 aa14.69□□□□□ -0.06
LIG1-201ENST00000263274 XPO4Q9C0E2 1151 aaKnown RBP14.69□□□□□ -0.06
LIG1-201ENST00000263274 CTNNA3Q9UI47 895 aa14.69□□□□□ -0.06
LIG1-201ENST00000263274 LMTK3Q96Q04 1460 aa14.69□□□□□ -0.06
LIG1-201ENST00000263274 DHX16O60231 1041 aaKnown RBP14.69□□□□□ -0.06
LIG1-201ENST00000263274 SFPQP23246 707 aaKnown RBP eCLIP14.69□□□□□ -0.06
LIG1-201ENST00000263274 FOXO4P98177 505 aa14.69□□□□□ -0.06
LIG1-201ENST00000263274 SNW1Q13573 536 aaKnown RBP14.69□□□□□ -0.06
LIG1-201ENST00000263274 KIF18AQ8NI77 898 aa14.69□□□□□ -0.06
LIG1-201ENST00000263274 XAGE2Q96GT9 111 aa14.69□□□□□ -0.06
LIG1-201ENST00000263274 LTN1O94822 1766 aa14.69□□□□□ -0.06
LIG1-201ENST00000263274 CARMIL3Q8ND23 1372 aa14.68□□□□□ -0.06
LIG1-201ENST00000263274 ZBTB22O15209 634 aa14.68□□□□□ -0.06
LIG1-201ENST00000263274 METTL24Q5JXM2 366 aa14.68□□□□□ -0.06
LIG1-201ENST00000263274 MYL10Q9BUA6 226 aa14.68□□□□□ -0.06
LIG1-201ENST00000263274 CNNM1Q9NRU3 951 aa14.68□□□□□ -0.06
LIG1-201ENST00000263274 ARHGAP23Q9P227 1491 aa14.68□□□□□ -0.06
LIG1-201ENST00000263274 RABL6Q3YEC7 729 aaPredicted RBP14.68□□□□□ -0.06
LIG1-201ENST00000263274 RBM43Q6ZSC3 357 aaKnown RBP14.68□□□□□ -0.06
LIG1-201ENST00000263274 SYNE4Q8N205 404 aa14.68□□□□□ -0.06
LIG1-201ENST00000263274 PHKBQ93100 1093 aa14.68□□□□□ -0.06
LIG1-201ENST00000263274 GTPBP4Q9BZE4 634 aaKnown RBP14.68□□□□□ -0.06
LIG1-201ENST00000263274 PRDM11Q9NQV5 511 aa14.68□□□□□ -0.06
LIG1-201ENST00000263274 HEG1Q9ULI3 1381 aa14.68□□□□□ -0.06
LIG1-201ENST00000263274 EXOSC10Q01780 885 aaKnown RBP14.68□□□□□ -0.06
LIG1-201ENST00000263274 LRRFIP1Q32MZ4 808 aaKnown RBP14.68□□□□□ -0.06
LIG1-201ENST00000263274 SPECC1Q5M775 1068 aa14.68□□□□□ -0.06
LIG1-201ENST00000263274 DHX40Q8IX18 779 aaKnown RBP14.68□□□□□ -0.06
LIG1-201ENST00000263274 PDILTQ8N807 584 aa14.68□□□□□ -0.06
LIG1-201ENST00000263274 NCAPD2Q15021 1401 aa14.67□□□□□ -0.06
LIG1-201ENST00000263274 ZNF202O95125 648 aa14.67□□□□□ -0.06
LIG1-201ENST00000263274 KIF20AO95235 890 aa14.67□□□□□ -0.06
LIG1-201ENST00000263274 FDPSP14324 419 aaKnown RBP14.67□□□□□ -0.06
LIG1-201ENST00000263274 SCARF1Q14162 830 aa14.67□□□□□ -0.06
LIG1-201ENST00000263274 ELF2Q15723 593 aa14.67□□□□□ -0.06
LIG1-201ENST00000263274 SYT10Q6XYQ8 523 aa14.67□□□□□ -0.06
LIG1-201ENST00000263274 NCOA7Q8NI08 942 aa14.67□□□□□ -0.06
LIG1-201ENST00000263274 PUS7LQ9H0K6 701 aaKnown RBP14.67□□□□□ -0.06
LIG1-201ENST00000263274 DENND2AQ9ULE3 1009 aa14.67□□□□□ -0.06
LIG1-201ENST00000263274 SH3TC1Q8TE82 1336 aa14.67□□□□□ -0.06
LIG1-201ENST00000263274 GOLGA8FQ08AF8 430 aa14.67□□□□□ -0.06
LIG1-201ENST00000263274 GOLGA8DPQ0D2H9 430 aa14.67□□□□□ -0.06
LIG1-201ENST00000263274 CFAP100Q494V2 611 aa14.67□□□□□ -0.06
LIG1-201ENST00000263274 HELBQ8NG08 1087 aaPredicted RBP14.67□□□□□ -0.06
LIG1-201ENST00000263274 MRFAP1L1Q96HT8 127 aa14.67□□□□□ -0.06
LIG1-201ENST00000263274 SLIT1O75093 1534 aa14.67□□□□□ -0.06
LIG1-201ENST00000263274 LDHAL6AQ6ZMR3 332 aa14.67□□□□□ -0.06
LIG1-201ENST00000263274 ZNF274Q96GC6 653 aaPredicted RBP14.67□□□□□ -0.06
LIG1-201ENST00000263274 KIAA1468Q9P260 1216 aa14.67□□□□□ -0.06
LIG1-201ENST00000263274 IFIT5Q13325 482 aaKnown RBP14.66□□□□□ -0.06
LIG1-201ENST00000263274 MYSM1Q5VVJ2 828 aa14.66□□□□□ -0.06
LIG1-201ENST00000263274 ADALQ6DHV7 355 aa14.66□□□□□ -0.06
LIG1-201ENST00000263274 ALG1Q9BT22 464 aa14.66□□□□□ -0.06
LIG1-201ENST00000263274 H7C1W4 665 aa14.66□□□□□ -0.06
LIG1-201ENST00000263274 GPAA1O43292 621 aa14.66□□□□□ -0.06
LIG1-201ENST00000263274 TRIM29Q14134 588 aa14.66□□□□□ -0.06
LIG1-201ENST00000263274 SLC9C2Q5TAH2 1124 aa14.66□□□□□ -0.06
LIG1-201ENST00000263274 LINC00301Q8NCQ3 95 aa14.66□□□□□ -0.06
LIG1-201ENST00000263274 ZBTB9Q96C00 473 aa14.66□□□□□ -0.06
LIG1-201ENST00000263274 KDM6AO15550 1401 aaPredicted RBP14.66□□□□□ -0.06
LIG1-201ENST00000263274 CPLX2Q6PUV4 134 aaKnown RBP14.65□□□□□ -0.06
LIG1-201ENST00000263274 ILDR1Q86SU0 546 aaPredicted RBP14.65□□□□□ -0.06
LIG1-201ENST00000263274 IPO4Q8TEX9 1081 aaKnown RBP14.65□□□□□ -0.06
LIG1-201ENST00000263274 INCENPQ9NQS7 918 aa14.65□□□□□ -0.06
LIG1-201ENST00000263274 NEMFO60524 1076 aa14.65□□□□□ -0.06
LIG1-201ENST00000263274 SYKP43405 635 aa14.65□□□□□ -0.06
LIG1-201ENST00000263274 EVA1CP58658 441 aa14.65□□□□□ -0.06
LIG1-201ENST00000263274 KCNG4Q8TDN1 519 aa14.65□□□□□ -0.06
LIG1-201ENST00000263274 C19orf44Q9H6X5 657 aa14.65□□□□□ -0.06
LIG1-201ENST00000263274 TMEM94Q12767 1356 aa14.65□□□□□ -0.06
LIG1-201ENST00000263274 B4E1Z4 1266 aa14.65□□□□□ -0.06
LIG1-201ENST00000263274 CREBRFQ8IUR6 639 aa14.65□□□□□ -0.06
LIG1-201ENST00000263274 ENGASEQ8NFI3 743 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms