RNA–Protein interactions for RNA: ENST00000262291.8

VMP1-201, Transcript of vacuole membrane protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMP1, Length 2,712 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-201ENST00000262291 DDX60Q8IY21 1712 aaKnown RBP16.1■□□□□ 0.17
VMP1-201ENST00000262291 FGAP02671 866 aa16.1■□□□□ 0.17
VMP1-201ENST00000262291 APPP05067 770 aa16.1■□□□□ 0.17
VMP1-201ENST00000262291 TCHHQ07283 1943 aa16.1■□□□□ 0.17
VMP1-201ENST00000262291 AKAP11Q9UKA4 1901 aa16.1■□□□□ 0.17
VMP1-201ENST00000262291 ZPR1O75312 459 aa16.1■□□□□ 0.17
VMP1-201ENST00000262291 CCT2P78371 535 aaKnown RBP16.1■□□□□ 0.17
VMP1-201ENST00000262291 CELF1Q92879 486 aaKnown RBP16.1■□□□□ 0.17
VMP1-201ENST00000262291 BTAF1O14981 1849 aa16.09■□□□□ 0.17
VMP1-201ENST00000262291 COL5A3P25940 1745 aaPredicted RBP16.09■□□□□ 0.17
VMP1-201ENST00000262291 GYG1P46976 350 aa16.09■□□□□ 0.17
VMP1-201ENST00000262291 USP48Q86UV5 1035 aa16.09■□□□□ 0.17
VMP1-201ENST00000262291 SPATA5Q8NB90 893 aa16.09■□□□□ 0.17
VMP1-201ENST00000262291 ARHGEF1Q92888 912 aaKnown RBP16.09■□□□□ 0.17
VMP1-201ENST00000262291 MTMR6Q9Y217 621 aa16.09■□□□□ 0.17
VMP1-201ENST00000262291 NPHP1O15259 732 aa16.09■□□□□ 0.17
VMP1-201ENST00000262291 FIBPO43427 364 aa16.09■□□□□ 0.17
VMP1-201ENST00000262291 PDE6AP16499 860 aa16.09■□□□□ 0.17
VMP1-201ENST00000262291 ADD2P35612 726 aa16.09■□□□□ 0.17
VMP1-201ENST00000262291 LARP1BQ659C4 914 aaKnown RBP16.09■□□□□ 0.17
VMP1-201ENST00000262291 NBPF5PQ86XG9 351 aaPredicted RBP16.09■□□□□ 0.17
VMP1-201ENST00000262291 STK11IPQ8N1F8 1099 aa16.09■□□□□ 0.17
VMP1-201ENST00000262291 NKX2-3Q8TAU0 364 aa16.09■□□□□ 0.17
VMP1-201ENST00000262291 NCOA5Q9HCD5 579 aaKnown RBP16.09■□□□□ 0.17
VMP1-201ENST00000262291 CNTNAP4Q9C0A0 1308 aa16.08■□□□□ 0.17
VMP1-201ENST00000262291 RPS6KA4O75676 772 aa16.08■□□□□ 0.16
VMP1-201ENST00000262291 ANKRD1Q15327 319 aa16.08■□□□□ 0.16
VMP1-201ENST00000262291 CDC37L1Q7L3B6 337 aa16.08■□□□□ 0.16
VMP1-201ENST00000262291 MAGEB6Q8N7X4 407 aa16.08■□□□□ 0.16
VMP1-201ENST00000262291 AK7Q96M32 723 aa16.08■□□□□ 0.16
VMP1-201ENST00000262291 SETDB2Q96T68 719 aa16.08■□□□□ 0.16
VMP1-201ENST00000262291 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.08■□□□□ 0.16
VMP1-201ENST00000262291 INCENPQ9NQS7 918 aa16.08■□□□□ 0.16
VMP1-201ENST00000262291 RTCBQ9Y3I0 505 aaKnown RBP16.08■□□□□ 0.16
VMP1-201ENST00000262291 RREB1Q92766 1687 aa16.08■□□□□ 0.16
VMP1-201ENST00000262291 F13A1P00488 732 aa16.08■□□□□ 0.16
VMP1-201ENST00000262291 PTMSP20962 102 aa16.08■□□□□ 0.16
VMP1-201ENST00000262291 ARID4AP29374 1257 aaPredicted RBP16.08■□□□□ 0.16
VMP1-201ENST00000262291 CLEC4GQ6UXB4 293 aa16.08■□□□□ 0.16
VMP1-201ENST00000262291 DHX32Q7L7V1 743 aaKnown RBP16.08■□□□□ 0.16
VMP1-201ENST00000262291 TAOK2Q9UL54 1235 aa16.08■□□□□ 0.16
VMP1-201ENST00000262291 TPM2P07951 284 aa16.07■□□□□ 0.16
VMP1-201ENST00000262291 ZFYP08048 801 aaPredicted RBP16.07■□□□□ 0.16
VMP1-201ENST00000262291 DNM1Q05193 864 aaKnown RBP16.07■□□□□ 0.16
VMP1-201ENST00000262291 FAM196AQ6ZSG2 479 aa16.07■□□□□ 0.16
VMP1-201ENST00000262291 ANKRD18AQ8IVF6 992 aa16.07■□□□□ 0.16
VMP1-201ENST00000262291 LRRC4BQ9NT99 713 aa16.07■□□□□ 0.16
VMP1-201ENST00000262291 NARFQ9UHQ1 456 aa16.07■□□□□ 0.16
VMP1-201ENST00000262291 TMEM63CQ9P1W3 806 aa16.07■□□□□ 0.16
VMP1-201ENST00000262291 UQCRFS1P1P0C7P4 283 aa16.06■□□□□ 0.16
VMP1-201ENST00000262291 KLRK1P26718 216 aa16.06■□□□□ 0.16
VMP1-201ENST00000262291 SCRN1Q12765 414 aa16.06■□□□□ 0.16
VMP1-201ENST00000262291 LRRFIP1Q32MZ4 808 aaKnown RBP16.06■□□□□ 0.16
VMP1-201ENST00000262291 ZSCAN23Q3MJ62 389 aa16.06■□□□□ 0.16
VMP1-201ENST00000262291 CDC5LQ99459 802 aaKnown RBP16.06■□□□□ 0.16
VMP1-201ENST00000262291 QTRT2Q9H974 415 aaKnown RBP16.06■□□□□ 0.16
VMP1-201ENST00000262291 LAMA4Q16363 1823 aa16.06■□□□□ 0.16
VMP1-201ENST00000262291 MIGA1Q8NAN2 632 aa16.05■□□□□ 0.16
VMP1-201ENST00000262291 GTF3C6Q969F1 213 aa16.05■□□□□ 0.16
VMP1-201ENST00000262291 ARMT1Q9H993 441 aa16.05■□□□□ 0.16
VMP1-201ENST00000262291 FAM13BQ9NYF5 915 aa16.05■□□□□ 0.16
VMP1-201ENST00000262291 JAG2Q9Y219 1238 aa16.05■□□□□ 0.16
VMP1-201ENST00000262291 IMMTQ16891 758 aaKnown RBP16.05■□□□□ 0.16
VMP1-201ENST00000262291 ABCF2Q9UG63 623 aa16.05■□□□□ 0.16
VMP1-201ENST00000262291 PRKAB2O43741 272 aa16.04■□□□□ 0.16
VMP1-201ENST00000262291 MBD4O95243 580 aa16.04■□□□□ 0.16
VMP1-201ENST00000262291 RFC4P35249 363 aa16.04■□□□□ 0.16
VMP1-201ENST00000262291 EXOSC10Q01780 885 aaKnown RBP16.04■□□□□ 0.16
VMP1-201ENST00000262291 TTF1Q15361 905 aaPredicted RBP16.04■□□□□ 0.16
VMP1-201ENST00000262291 LRP5O75197 1615 aa16.04■□□□□ 0.16
VMP1-201ENST00000262291 AIDAQ96BJ3 306 aa16.04■□□□□ 0.16
VMP1-201ENST00000262291 NBPF3Q9H094 633 aa16.04■□□□□ 0.16
VMP1-201ENST00000262291 MINPP1Q9UNW1 487 aa16.04■□□□□ 0.16
VMP1-201ENST00000262291 TCRBV5S4A2TA0A5A2 114 aa16.03■□□□□ 0.16
VMP1-201ENST00000262291 SYCE3A1L190 88 aa16.03■□□□□ 0.16
VMP1-201ENST00000262291 ZNF213O14771 459 aa16.03■□□□□ 0.16
VMP1-201ENST00000262291 ZNF512BQ96KM6 892 aaPredicted RBP16.03■□□□□ 0.16
VMP1-201ENST00000262291 ALDH8A1Q9H2A2 487 aaPredicted RBP16.03■□□□□ 0.16
VMP1-201ENST00000262291 TFCP2L1Q9NZI6 479 aa16.03■□□□□ 0.16
VMP1-201ENST00000262291 BCORQ6W2J9 1755 aa16.03■□□□□ 0.16
VMP1-201ENST00000262291 THSD7AQ9UPZ6 1657 aa16.03■□□□□ 0.16
VMP1-201ENST00000262291 TBC1D10CQ8IV04 446 aa16.03■□□□□ 0.16
VMP1-201ENST00000262291 LRP2BPQ9P2M1 347 aa16.03■□□□□ 0.16
VMP1-201ENST00000262291 TRPC5Q9UL62 973 aaPredicted RBP16.03■□□□□ 0.16
VMP1-201ENST00000262291 MYH7P12883 1935 aa16.03■□□□□ 0.16
VMP1-201ENST00000262291 KDM4AO75164 1064 aa16.03■□□□□ 0.16
VMP1-201ENST00000262291 TRIM37O94972 964 aa16.03■□□□□ 0.16
VMP1-201ENST00000262291 RC3H1Q5TC82 1133 aaKnown RBP16.03■□□□□ 0.16
VMP1-201ENST00000262291 ZSCAN25Q6NSZ9 544 aa16.03■□□□□ 0.16
VMP1-201ENST00000262291 TFIP11Q9UBB9 837 aaKnown RBP16.03■□□□□ 0.16
VMP1-201ENST00000262291 CTNNA3Q9UI47 895 aa16.03■□□□□ 0.16
VMP1-201ENST00000262291 PRC1O43663 620 aa16.02■□□□□ 0.16
VMP1-201ENST00000262291 SF3B3Q15393 1217 aaKnown RBP16.02■□□□□ 0.16
VMP1-201ENST00000262291 NLRP3Q96P20 1036 aa16.02■□□□□ 0.16
VMP1-201ENST00000262291 GUCY1B3Q02153 619 aa16.02■□□□□ 0.15
VMP1-201ENST00000262291 MAP3K12Q12852 859 aa16.02■□□□□ 0.15
VMP1-201ENST00000262291 UBE3CQ15386 1083 aa16.02■□□□□ 0.15
VMP1-201ENST00000262291 TRAPPC3LQ5T215 181 aa16.02■□□□□ 0.15
VMP1-201ENST00000262291 VPS37DQ86XT2 251 aa16.02■□□□□ 0.15
VMP1-201ENST00000262291 STRBPQ96SI9 672 aaKnown RBP16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms