RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 ARHGAP29Q52LW3 1261 aa15.15■□□□□ 0.02
SNX1-201ENST00000261889 NEK11Q8NG66 645 aa15.15■□□□□ 0.02
SNX1-201ENST00000261889 CLIC6Q96NY7 704 aa15.15■□□□□ 0.02
SNX1-201ENST00000261889 ZBTB3Q9H5J0 574 aa15.15■□□□□ 0.02
SNX1-201ENST00000261889 PARP4Q9UKK3 1724 aaKnown RBP15.15■□□□□ 0.02
SNX1-201ENST00000261889 URI1O94763 535 aaPredicted RBP15.15■□□□□ 0.02
SNX1-201ENST00000261889 PTPN12Q05209 780 aaKnown RBP15.15■□□□□ 0.02
SNX1-201ENST00000261889 NEXNQ0ZGT2 675 aa15.15■□□□□ 0.02
SNX1-201ENST00000261889 GCKRQ14397 625 aa15.15■□□□□ 0.02
SNX1-201ENST00000261889 ZNF827Q17R98 1081 aa15.15■□□□□ 0.02
SNX1-201ENST00000261889 PDILTQ8N807 584 aa15.15■□□□□ 0.02
SNX1-201ENST00000261889 ANKRD24Q8TF21 1146 aa15.15■□□□□ 0.02
SNX1-201ENST00000261889 IP6K1Q92551 441 aa15.15■□□□□ 0.02
SNX1-201ENST00000261889 COL5A2P05997 1499 aaPredicted RBP15.14■□□□□ 0.01
SNX1-201ENST00000261889 PDIA6Q15084 440 aa15.14■□□□□ 0.01
SNX1-201ENST00000261889 PLEKHO1Q53GL0 409 aaPredicted RBP15.14■□□□□ 0.01
SNX1-201ENST00000261889 CEP57L1Q8IYX8 460 aa15.14■□□□□ 0.01
SNX1-201ENST00000261889 CFAP45Q9UL16 551 aa15.14■□□□□ 0.01
SNX1-201ENST00000261889 MED23Q9ULK4 1368 aa15.14■□□□□ 0.01
SNX1-201ENST00000261889 KIF28PB7ZC32 967 aa15.13■□□□□ 0.01
SNX1-201ENST00000261889 FANCGO15287 622 aa15.13■□□□□ 0.01
SNX1-201ENST00000261889 FOXN1O15353 648 aa15.13■□□□□ 0.01
SNX1-201ENST00000261889 SLIT2O94813 1529 aa15.13■□□□□ 0.01
SNX1-201ENST00000261889 MCMDC2Q4G0Z9 681 aa15.13■□□□□ 0.01
SNX1-201ENST00000261889 PHKBQ93100 1093 aa15.13■□□□□ 0.01
SNX1-201ENST00000261889 PPP1R13BQ96KQ4 1090 aa15.13■□□□□ 0.01
SNX1-201ENST00000261889 FDPSP14324 419 aaKnown RBP15.13■□□□□ 0.01
SNX1-201ENST00000261889 KRT222Q8N1A0 295 aa15.13■□□□□ 0.01
SNX1-201ENST00000261889 CMTR1Q8N1G2 835 aaKnown RBP15.13■□□□□ 0.01
SNX1-201ENST00000261889 UTP14AQ9BVJ6 771 aaKnown RBP15.13■□□□□ 0.01
SNX1-201ENST00000261889 SIPA1L3O60292 1781 aaPredicted RBP15.12■□□□□ 0.01
SNX1-201ENST00000261889 USP42Q9H9J4 1324 aaKnown RBP15.12■□□□□ 0.01
SNX1-201ENST00000261889 E7EWF7 191 aa15.12■□□□□ 0.01
SNX1-201ENST00000261889 UBAP1LF5GYI3 381 aa15.12■□□□□ 0.01
SNX1-201ENST00000261889 AKAP4Q5JQC9 854 aa15.12■□□□□ 0.01
SNX1-201ENST00000261889 CREBRFQ8IUR6 639 aa15.12■□□□□ 0.01
SNX1-201ENST00000261889 DESI2Q9BSY9 194 aa15.12■□□□□ 0.01
SNX1-201ENST00000261889 IRX2Q9BZI1 471 aaPredicted RBP15.12■□□□□ 0.01
SNX1-201ENST00000261889 SENP2Q9HC62 589 aa15.12■□□□□ 0.01
SNX1-201ENST00000261889 M0R2C6 588 aa15.12■□□□□ 0.01
SNX1-201ENST00000261889 CSB-PGBD3P0DP91 1061 aa15.12■□□□□ 0.01
SNX1-201ENST00000261889 PNOCQ13519 176 aa15.12■□□□□ 0.01
SNX1-201ENST00000261889 TERF2Q15554 542 aa15.12■□□□□ 0.01
SNX1-201ENST00000261889 TRMT44Q8IYL2 757 aaKnown RBP15.12■□□□□ 0.01
SNX1-201ENST00000261889 KCNB2Q92953 911 aa15.12■□□□□ 0.01
SNX1-201ENST00000261889 PAXBP1Q9Y5B6 917 aa15.12■□□□□ 0.01
SNX1-201ENST00000261889 FAM160A1Q05DH4 1040 aa15.11■□□□□ 0.01
SNX1-201ENST00000261889 MTX1Q13505 466 aa15.11■□□□□ 0.01
SNX1-201ENST00000261889 A0A0U1RQJ8 604 aa15.11■□□□□ 0.01
SNX1-201ENST00000261889 GOLGA8BA8MQT2 603 aa15.11■□□□□ 0.01
SNX1-201ENST00000261889 SFPQP23246 707 aaKnown RBP eCLIP15.11■□□□□ 0.01
SNX1-201ENST00000261889 PDIA3P30101 505 aaKnown RBP15.11■□□□□ 0.01
SNX1-201ENST00000261889 CLCN6P51797 869 aa15.11■□□□□ 0.01
SNX1-201ENST00000261889 ANKRD13DQ6ZTN6 518 aa15.11■□□□□ 0.01
SNX1-201ENST00000261889 NYAP1Q6ZVC0 841 aa15.11■□□□□ 0.01
SNX1-201ENST00000261889 ATRIPQ8WXE1 791 aa15.11■□□□□ 0.01
SNX1-201ENST00000261889 KLF18A0A0U1RQI7 1052 aa15.11■□□□□ 0.01
SNX1-201ENST00000261889 SLU7O95391 586 aaKnown RBP15.11■□□□□ 0.01
SNX1-201ENST00000261889 DDX58O95786 925 aaKnown RBP15.11■□□□□ 0.01
SNX1-201ENST00000261889 ADORA1P30542 326 aa15.11■□□□□ 0.01
SNX1-201ENST00000261889 CFAP100Q494V2 611 aa15.11■□□□□ 0.01
SNX1-201ENST00000261889 GRAMD1CQ8IYS0 662 aa15.11■□□□□ 0.01
SNX1-201ENST00000261889 ZNF397Q8NF99 534 aaPredicted RBP15.11■□□□□ 0.01
SNX1-201ENST00000261889 CARD6Q9BX69 1037 aa15.11■□□□□ 0.01
SNX1-201ENST00000261889 ANO10Q9NW15 660 aa15.11■□□□□ 0.01
SNX1-201ENST00000261889 ALDH1L1O75891 902 aa15.1■□□□□ 0.01
SNX1-201ENST00000261889 KARSQ15046 597 aaKnown RBP15.1■□□□□ 0.01
SNX1-201ENST00000261889 RBM43Q6ZSC3 357 aaKnown RBP15.1■□□□□ 0.01
SNX1-201ENST00000261889 DHX32Q7L7V1 743 aaKnown RBP15.1■□□□□ 0.01
SNX1-201ENST00000261889 SYNE4Q8N205 404 aa15.1■□□□□ 0.01
SNX1-201ENST00000261889 CEMIPQ8WUJ3 1361 aa15.1■□□□□ 0.01
SNX1-201ENST00000261889 JCADQ9P266 1359 aa15.1■□□□□ 0.01
SNX1-201ENST00000261889 KIF20AO95235 890 aa15.1■□□□□ 0.01
SNX1-201ENST00000261889 SERPINC1P01008 464 aa15.1■□□□□ 0.01
SNX1-201ENST00000261889 HSPD1P10809 573 aaKnown RBP15.1■□□□□ 0.01
SNX1-201ENST00000261889 MRPS27Q92552 414 aaKnown RBP15.1■□□□□ 0.01
SNX1-201ENST00000261889 ZNF790Q6PG37 636 aa15.1■□□□□ 0.01
SNX1-201ENST00000261889 TTLL7Q6ZT98 887 aa15.1■□□□□ 0.01
SNX1-201ENST00000261889 CPLX3Q8WVH0 158 aa15.1■□□□□ 0.01
SNX1-201ENST00000261889 FEZ1Q99689 392 aa15.1■□□□□ 0.01
SNX1-201ENST00000261889 DDX21Q9NR30 783 aaKnown RBP eCLIP15.1■□□□□ 0.01
SNX1-201ENST00000261889 ORC3Q9UBD5 711 aaPredicted RBP15.1■□□□□ 0.01
SNX1-201ENST00000261889 MROH7-TTC4A0A0A0MT08 1334 aa15.09■□□□□ 0.01
SNX1-201ENST00000261889 HIP1O00291 1037 aa15.09■□□□□ 0.01
SNX1-201ENST00000261889 SCARF1Q14162 830 aa15.09■□□□□ 0.01
SNX1-201ENST00000261889 ENGASEQ8NFI3 743 aa15.09■□□□□ 0.01
SNX1-201ENST00000261889 OSBP2Q969R2 916 aa15.09■□□□□ 0.01
SNX1-201ENST00000261889 C8orf76Q96K31 380 aa15.09■□□□□ 0.01
SNX1-201ENST00000261889 CPLX1O14810 134 aa15.09■□□□□ 0.01
SNX1-201ENST00000261889 WDHD1O75717 1129 aaPredicted RBP15.09■□□□□ 0.01
SNX1-201ENST00000261889 APPP05067 770 aa15.09■□□□□ 0.01
SNX1-201ENST00000261889 ADKP55263 362 aaKnown RBP15.09■□□□□ 0.01
SNX1-201ENST00000261889 TEX35Q5T0J7 233 aa15.09■□□□□ 0.01
SNX1-201ENST00000261889 CHMP4AQ9BY43 222 aa15.09■□□□□ 0.01
SNX1-201ENST00000261889 PAG1Q9NWQ8 432 aa15.09■□□□□ 0.01
SNX1-201ENST00000261889 RCOR1Q9UKL0 485 aa15.09■□□□□ 0.01
SNX1-201ENST00000261889 SLC3A2P08195 630 aaKnown RBP15.08■□□□□ 0.01
SNX1-201ENST00000261889 MICU3Q86XE3 530 aa15.08■□□□□ 0.01
SNX1-201ENST00000261889 ST5P78524 1137 aa15.08■□□□□ 0
SNX1-201ENST00000261889 FMR1NBQ8N0W7 255 aaPredicted RBP15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms