RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 USP17L1Q7RTZ2 530 aa13.21□□□□□ -0.29
VPS50-201ENST00000251739 SULF1Q8IWU6 871 aa13.21□□□□□ -0.29
VPS50-201ENST00000251739 C2orf69Q8N8R5 385 aa13.21□□□□□ -0.29
VPS50-201ENST00000251739 MYOZ2Q9NPC6 264 aa13.21□□□□□ -0.29
VPS50-201ENST00000251739 IRS2Q9Y4H2 1338 aa13.2□□□□□ -0.3
VPS50-201ENST00000251739 G3V3G9 751 aa13.2□□□□□ -0.3
VPS50-201ENST00000251739 SLC10A3P09131 477 aa13.2□□□□□ -0.3
VPS50-201ENST00000251739 SCARF1Q14162 830 aa13.2□□□□□ -0.3
VPS50-201ENST00000251739 FAM161AQ3B820 660 aa13.2□□□□□ -0.3
VPS50-201ENST00000251739 TXNRD3Q86VQ6 643 aa13.2□□□□□ -0.3
VPS50-201ENST00000251739 EFCAB3Q8N7B9 438 aa13.2□□□□□ -0.3
VPS50-201ENST00000251739 LINS1Q8NG48 757 aa13.2□□□□□ -0.3
VPS50-201ENST00000251739 DNAAF4Q8WXU2 420 aa13.2□□□□□ -0.3
VPS50-201ENST00000251739 TNRC18O15417 2968 aaPredicted RBP13.2□□□□□ -0.3
VPS50-201ENST00000251739 VAMP4O75379 141 aa13.19□□□□□ -0.3
VPS50-201ENST00000251739 STRIP1Q5VSL9 837 aa13.19□□□□□ -0.3
VPS50-201ENST00000251739 WDR63Q8IWG1 891 aa13.19□□□□□ -0.3
VPS50-201ENST00000251739 CCDC102AQ96A19 550 aa13.19□□□□□ -0.3
VPS50-201ENST00000251739 SAGE1Q9NXZ1 904 aa13.19□□□□□ -0.3
VPS50-201ENST00000251739 LEMD3Q9Y2U8 911 aa13.19□□□□□ -0.3
VPS50-201ENST00000251739 ARAP2Q8WZ64 1704 aa13.19□□□□□ -0.3
VPS50-201ENST00000251739 MYO3BQ8WXR4 1341 aa13.18□□□□□ -0.3
VPS50-201ENST00000251739 ITGA6P23229 1130 aa13.18□□□□□ -0.3
VPS50-201ENST00000251739 KLRK1P26718 216 aa13.18□□□□□ -0.3
VPS50-201ENST00000251739 FKBP1BP68106 108 aa13.18□□□□□ -0.3
VPS50-201ENST00000251739 FKBP5Q13451 457 aaPredicted RBP13.18□□□□□ -0.3
VPS50-201ENST00000251739 MCOLN1Q9GZU1 580 aa13.18□□□□□ -0.3
VPS50-201ENST00000251739 COA1Q9GZY4 146 aa13.18□□□□□ -0.3
VPS50-201ENST00000251739 MYH16Q9H6N6 1097 aa13.18□□□□□ -0.3
VPS50-201ENST00000251739 MRS2Q9HD23 443 aa13.18□□□□□ -0.3
VPS50-201ENST00000251739 ZNF804BA4D1E1 1349 aa13.17□□□□□ -0.3
VPS50-201ENST00000251739 IGHMBP2P38935 993 aaKnown RBP13.17□□□□□ -0.3
VPS50-201ENST00000251739 ZNF157P51786 506 aaPredicted RBP13.17□□□□□ -0.3
VPS50-201ENST00000251739 KIF23Q02241 960 aaPredicted RBP13.17□□□□□ -0.3
VPS50-201ENST00000251739 MKRN3Q13064 507 aaKnown RBP13.17□□□□□ -0.3
VPS50-201ENST00000251739 NBPF9Q3BBW0 867 aa13.17□□□□□ -0.3
VPS50-201ENST00000251739 IER5LQ5T953 404 aa13.17□□□□□ -0.3
VPS50-201ENST00000251739 RASAL3Q86YV0 1011 aa13.17□□□□□ -0.3
VPS50-201ENST00000251739 ZBED3Q96IU2 234 aaPredicted RBP13.17□□□□□ -0.3
VPS50-201ENST00000251739 MXD3Q9BW11 206 aa13.17□□□□□ -0.3
VPS50-201ENST00000251739 WNT10BO00744 389 aa13.16□□□□□ -0.3
VPS50-201ENST00000251739 RGS19P49795 217 aa13.16□□□□□ -0.3
VPS50-201ENST00000251739 MMP14P50281 582 aa13.16□□□□□ -0.3
VPS50-201ENST00000251739 FOXO4P98177 505 aa13.16□□□□□ -0.3
VPS50-201ENST00000251739 EXOSC9Q06265 439 aaKnown RBP13.16□□□□□ -0.3
VPS50-201ENST00000251739 BEND3Q5T5X7 828 aa13.16□□□□□ -0.3
VPS50-201ENST00000251739 C15orf52Q6ZUT6 534 aaKnown RBP13.16□□□□□ -0.3
VPS50-201ENST00000251739 ANKRD2Q9GZV1 360 aa13.16□□□□□ -0.3
VPS50-201ENST00000251739 CHRNDQ07001 517 aa13.15□□□□□ -0.3
VPS50-201ENST00000251739 CSRNP1Q96S65 589 aa13.15□□□□□ -0.3
VPS50-201ENST00000251739 RNF186Q9NXI6 227 aa13.15□□□□□ -0.3
VPS50-201ENST00000251739 COL1A1P02452 1464 aaPredicted RBP13.15□□□□□ -0.3
VPS50-201ENST00000251739 F6X3S4 739 aa13.14□□□□□ -0.31
VPS50-201ENST00000251739 SLC39A7Q92504 469 aa13.14□□□□□ -0.31
VPS50-201ENST00000251739 MPHOSPH8Q99549 860 aa13.14□□□□□ -0.31
VPS50-201ENST00000251739 SCAF8Q9UPN6 1271 aaKnown RBP13.14□□□□□ -0.31
VPS50-201ENST00000251739 OTOFQ9HC10 1997 aa13.13□□□□□ -0.31
VPS50-201ENST00000251739 SSC5DA1L4H1 1573 aa13.13□□□□□ -0.31
VPS50-201ENST00000251739 SNAP23O00161 211 aa13.13□□□□□ -0.31
VPS50-201ENST00000251739 SASH1O94885 1247 aa13.13□□□□□ -0.31
VPS50-201ENST00000251739 MOB2Q70IA6 237 aa13.13□□□□□ -0.31
VPS50-201ENST00000251739 OGFOD1Q8N543 542 aa13.13□□□□□ -0.31
VPS50-201ENST00000251739 CERS5Q8N5B7 392 aa13.13□□□□□ -0.31
VPS50-201ENST00000251739 ZNF521Q96K83 1311 aa13.13□□□□□ -0.31
VPS50-201ENST00000251739 ANKRD18BA2A2Z9 1011 aa13.12□□□□□ -0.31
VPS50-201ENST00000251739 CCDC85CA6NKD9 419 aa13.12□□□□□ -0.31
VPS50-201ENST00000251739 TRPA1O75762 1119 aa13.12□□□□□ -0.31
VPS50-201ENST00000251739 DGKZQ13574 1117 aa13.12□□□□□ -0.31
VPS50-201ENST00000251739 EPHA10Q5JZY3 1008 aa13.12□□□□□ -0.31
VPS50-201ENST00000251739 TTLL5Q6EMB2 1281 aa13.12□□□□□ -0.31
VPS50-201ENST00000251739 MFRPQ9BY79 579 aa13.12□□□□□ -0.31
VPS50-201ENST00000251739 CD209Q9NNX6 404 aa13.12□□□□□ -0.31
VPS50-201ENST00000251739 HTTP42858 3142 aa13.11□□□□□ -0.31
VPS50-201ENST00000251739 GRM8O00222 908 aa13.11□□□□□ -0.31
VPS50-201ENST00000251739 ANP32CO43423 234 aa13.11□□□□□ -0.31
VPS50-201ENST00000251739 IL1R1P14778 569 aa13.11□□□□□ -0.31
VPS50-201ENST00000251739 GTF2IP78347 998 aa13.11□□□□□ -0.31
VPS50-201ENST00000251739 IFIT5Q13325 482 aaKnown RBP13.11□□□□□ -0.31
VPS50-201ENST00000251739 PRAMEF18Q5VWM3 479 aa13.11□□□□□ -0.31
VPS50-201ENST00000251739 APOBEC3FQ8IUX4 373 aaKnown RBP13.11□□□□□ -0.31
VPS50-201ENST00000251739 KIAA0825Q8IV33 1275 aa13.11□□□□□ -0.31
VPS50-201ENST00000251739 MTMR14Q8NCE2 650 aa13.11□□□□□ -0.31
VPS50-201ENST00000251739 ZNF316A6NFI3 1004 aaPredicted RBP13.1□□□□□ -0.31
VPS50-201ENST00000251739 UBE2Q2LH0YL09 131 aa13.1□□□□□ -0.31
VPS50-201ENST00000251739 TAF5LO75529 589 aa13.1□□□□□ -0.31
VPS50-201ENST00000251739 ALDH1L1O75891 902 aa13.1□□□□□ -0.31
VPS50-201ENST00000251739 C7P10643 843 aa13.1□□□□□ -0.31
VPS50-201ENST00000251739 IRX5P78411 483 aaPredicted RBP13.1□□□□□ -0.31
VPS50-201ENST00000251739 LMBR1LQ6UX01 489 aa13.1□□□□□ -0.31
VPS50-201ENST00000251739 HELBQ8NG08 1087 aaPredicted RBP13.1□□□□□ -0.31
VPS50-201ENST00000251739 FBXW7Q969H0 707 aa13.1□□□□□ -0.31
VPS50-201ENST00000251739 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.1□□□□□ -0.31
VPS50-201ENST00000251739 SALL2Q9Y467 1007 aaPredicted RBP13.1□□□□□ -0.31
VPS50-201ENST00000251739 KCNJ4P48050 445 aa13.09□□□□□ -0.31
VPS50-201ENST00000251739 FKBP1AP62942 108 aaKnown RBP13.09□□□□□ -0.31
VPS50-201ENST00000251739 LDLRAD1Q5T700 205 aa13.09□□□□□ -0.31
VPS50-201ENST00000251739 FBXO22Q8NEZ5 403 aa13.09□□□□□ -0.31
VPS50-201ENST00000251739 KAZALD1Q96I82 304 aa13.09□□□□□ -0.31
VPS50-201ENST00000251739 HDAC9Q9UKV0 1011 aa13.09□□□□□ -0.31
VPS50-201ENST00000251739 UTYO14607 1347 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 105.7 ms