RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 APBB1IPQ7Z5R6 666 aaPredicted RBP21.51■■□□□ 1.03
SMPD3-201ENST00000219334 GTPBP4Q9BZE4 634 aaKnown RBP21.51■■□□□ 1.03
SMPD3-201ENST00000219334 FAM98CQ17RN3 349 aaKnown RBP21.51■■□□□ 1.03
SMPD3-201ENST00000219334 LARGE2Q8N3Y3 721 aa21.51■■□□□ 1.03
SMPD3-201ENST00000219334 DHX58Q96C10 678 aa21.51■■□□□ 1.03
SMPD3-201ENST00000219334 VAMP4O75379 141 aa21.51■■□□□ 1.03
SMPD3-201ENST00000219334 HOOK2Q96ED9 719 aa21.51■■□□□ 1.03
SMPD3-201ENST00000219334 TBC1D32Q96NH3 1257 aa21.51■■□□□ 1.03
SMPD3-201ENST00000219334 RBM28Q9NW13 759 aaKnown RBP21.51■■□□□ 1.03
SMPD3-201ENST00000219334 MBD4O95243 580 aa21.5■■□□□ 1.03
SMPD3-201ENST00000219334 ITGA6P23229 1130 aa21.5■■□□□ 1.03
SMPD3-201ENST00000219334 ADCY5O95622 1261 aa21.5■■□□□ 1.03
SMPD3-201ENST00000219334 RGS22Q8NE09 1264 aa21.5■■□□□ 1.03
SMPD3-201ENST00000219334 ARHGEF10LQ9HCE6 1279 aa21.5■■□□□ 1.03
SMPD3-201ENST00000219334 PRPHP41219 470 aa21.5■■□□□ 1.03
SMPD3-201ENST00000219334 NOD1Q9Y239 953 aa21.5■■□□□ 1.03
SMPD3-201ENST00000219334 HCLS1P14317 486 aaPredicted RBP21.5■■□□□ 1.03
SMPD3-201ENST00000219334 PDE6BP35913 854 aa21.49■■□□□ 1.03
SMPD3-201ENST00000219334 DPP8Q6V1X1 898 aaPredicted RBP21.49■■□□□ 1.03
SMPD3-201ENST00000219334 BBXQ8WY36 941 aaPredicted RBP21.49■■□□□ 1.03
SMPD3-201ENST00000219334 CCDC171Q6TFL3 1326 aa21.49■■□□□ 1.03
SMPD3-201ENST00000219334 PDE8AO60658 829 aa21.49■■□□□ 1.03
SMPD3-201ENST00000219334 DPH6Q7L8W6 267 aa21.49■■□□□ 1.03
SMPD3-201ENST00000219334 SUPT20HQ8NEM7 779 aa21.49■■□□□ 1.03
SMPD3-201ENST00000219334 C16orf45Q96MC5 204 aaPredicted RBP21.49■■□□□ 1.03
SMPD3-201ENST00000219334 FERP16591 822 aa21.49■■□□□ 1.03
SMPD3-201ENST00000219334 SAP30BPQ9UHR5 308 aaKnown RBP21.49■■□□□ 1.03
SMPD3-201ENST00000219334 PCDHB15Q9Y5E8 787 aa21.49■■□□□ 1.03
SMPD3-201ENST00000219334 IVNS1ABPQ9Y6Y0 642 aa21.49■■□□□ 1.03
SMPD3-201ENST00000219334 EYA2O00167 538 aa21.49■■□□□ 1.03
SMPD3-201ENST00000219334 SPTLC2O15270 562 aa21.49■■□□□ 1.03
SMPD3-201ENST00000219334 CEP85Q6P2H3 762 aa21.49■■□□□ 1.03
SMPD3-201ENST00000219334 DHX32Q7L7V1 743 aaKnown RBP21.49■■□□□ 1.03
SMPD3-201ENST00000219334 PUM3Q15397 648 aaKnown RBP21.49■■□□□ 1.03
SMPD3-201ENST00000219334 UVSSAQ2YD98 709 aa21.49■■□□□ 1.03
SMPD3-201ENST00000219334 CHST3Q7LGC8 479 aa21.49■■□□□ 1.03
SMPD3-201ENST00000219334 MSANTD4Q8NCY6 345 aa21.49■■□□□ 1.03
SMPD3-201ENST00000219334 BEGAINQ9BUH8 593 aa21.49■■□□□ 1.03
SMPD3-201ENST00000219334 SNW1Q13573 536 aaKnown RBP21.48■■□□□ 1.03
SMPD3-201ENST00000219334 KRT24Q2M2I5 525 aa21.48■■□□□ 1.03
SMPD3-201ENST00000219334 DTHD1Q6ZMT9 781 aa21.48■■□□□ 1.03
SMPD3-201ENST00000219334 TSPYL6Q8N831 410 aa21.48■■□□□ 1.03
SMPD3-201ENST00000219334 ORAI2Q96SN7 254 aa21.48■■□□□ 1.03
SMPD3-201ENST00000219334 MCM7P33993 719 aa21.48■■□□□ 1.03
SMPD3-201ENST00000219334 BAG6P46379 1132 aa21.48■■□□□ 1.03
SMPD3-201ENST00000219334 CCDC87Q9NVE4 849 aa21.48■■□□□ 1.03
SMPD3-201ENST00000219334 PRAG1Q86YV5 1406 aa21.48■■□□□ 1.03
SMPD3-201ENST00000219334 RAD50Q92878 1312 aa21.48■■□□□ 1.03
SMPD3-201ENST00000219334 GNG11P61952 73 aa21.47■■□□□ 1.03
SMPD3-201ENST00000219334 GIMAP6Q6P9H5 292 aa21.47■■□□□ 1.03
SMPD3-201ENST00000219334 USP21Q9UK80 565 aa21.47■■□□□ 1.03
SMPD3-201ENST00000219334 PRIM1P49642 420 aaKnown RBP21.47■■□□□ 1.03
SMPD3-201ENST00000219334 PHACTR3Q96KR7 559 aa21.47■■□□□ 1.03
SMPD3-201ENST00000219334 EIF4G3O43432 1585 aaKnown RBP21.47■■□□□ 1.03
SMPD3-201ENST00000219334 BICDL2A1A5D9 508 aa21.47■■□□□ 1.03
SMPD3-201ENST00000219334 CCDC175P0C221 793 aa21.47■■□□□ 1.03
SMPD3-201ENST00000219334 APOBRQ0VD83 1088 aa21.47■■□□□ 1.03
SMPD3-201ENST00000219334 DCTPP1Q9H773 170 aa21.47■■□□□ 1.03
SMPD3-201ENST00000219334 PPP1R14CQ8TAE6 165 aa21.47■■□□□ 1.03
SMPD3-201ENST00000219334 CEP83Q9Y592 693 aa21.47■■□□□ 1.03
SMPD3-201ENST00000219334 CREB3L3Q68CJ9 461 aa21.46■■□□□ 1.03
SMPD3-201ENST00000219334 METTL22Q9BUU2 404 aaPredicted RBP21.46■■□□□ 1.03
SMPD3-201ENST00000219334 WDR66Q8TBY9 1149 aa21.46■■□□□ 1.03
SMPD3-201ENST00000219334 MRPS9P82933 396 aaKnown RBP21.46■■□□□ 1.03
SMPD3-201ENST00000219334 MAATS1Q7Z4T9 603 aa21.46■■□□□ 1.03
SMPD3-201ENST00000219334 CERS3Q8IU89 383 aa21.46■■□□□ 1.03
SMPD3-201ENST00000219334 PLCD3Q8N3E9 789 aa21.46■■□□□ 1.03
SMPD3-201ENST00000219334 GPHNQ9NQX3 736 aaPredicted RBP21.46■■□□□ 1.03
SMPD3-201ENST00000219334 HELLSQ9NRZ9 838 aa21.46■■□□□ 1.03
SMPD3-201ENST00000219334 A0A1W2PP64 1363 aa21.46■■□□□ 1.03
SMPD3-201ENST00000219334 BABAM1Q9NWV8 329 aa21.45■■□□□ 1.03
SMPD3-201ENST00000219334 SELENOOQ9BVL4 669 aa21.45■■□□□ 1.02
SMPD3-201ENST00000219334 A0A1B0GUL7 405 aa21.45■■□□□ 1.02
SMPD3-201ENST00000219334 APBA3O96018 575 aa21.45■■□□□ 1.02
SMPD3-201ENST00000219334 SREK1Q8WXA9 508 aaKnown RBP21.45■■□□□ 1.02
SMPD3-201ENST00000219334 CNPY2Q9Y2B0 182 aa21.45■■□□□ 1.02
SMPD3-201ENST00000219334 HSP90AA4PQ58FG1 418 aa21.45■■□□□ 1.02
SMPD3-201ENST00000219334 CCDC117Q8IWD4 279 aaPredicted RBP21.45■■□□□ 1.02
SMPD3-201ENST00000219334 GPCPD1Q9NPB8 672 aa21.45■■□□□ 1.02
SMPD3-201ENST00000219334 KLHL40Q2TBA0 621 aa21.44■■□□□ 1.02
SMPD3-201ENST00000219334 EEF2P13639 858 aaKnown RBP21.44■■□□□ 1.02
SMPD3-201ENST00000219334 AKNAD1Q5T1N1 836 aa21.44■■□□□ 1.02
SMPD3-201ENST00000219334 NUP153P49790 1475 aaKnown RBP21.44■■□□□ 1.02
SMPD3-201ENST00000219334 ITSN2Q9NZM3 1697 aa21.44■■□□□ 1.02
SMPD3-201ENST00000219334 ARHGEF10O15013 1369 aa21.44■■□□□ 1.02
SMPD3-201ENST00000219334 F13A1P00488 732 aa21.44■■□□□ 1.02
SMPD3-201ENST00000219334 LMBR1Q8WVP7 490 aa21.44■■□□□ 1.02
SMPD3-201ENST00000219334 SLAIN2Q9P270 581 aa21.43■■□□□ 1.02
SMPD3-201ENST00000219334 CKAP4Q07065 602 aaKnown RBP21.43■■□□□ 1.02
SMPD3-201ENST00000219334 OTUD6BQ8N6M0 293 aa21.43■■□□□ 1.02
SMPD3-201ENST00000219334 PKD2L1Q9P0L9 805 aa21.43■■□□□ 1.02
SMPD3-201ENST00000219334 BRAPQ7Z569 592 aa21.43■■□□□ 1.02
SMPD3-201ENST00000219334 GJC1P36383 396 aa21.43■■□□□ 1.02
SMPD3-201ENST00000219334 ZKSCAN3Q9BRR0 538 aa21.43■■□□□ 1.02
SMPD3-201ENST00000219334 SBNO1A3KN83 1393 aa21.43■■□□□ 1.02
SMPD3-201ENST00000219334 PTPDC1A2A3K4 754 aa21.42■■□□□ 1.02
SMPD3-201ENST00000219334 RPL13P26373 211 aaKnown RBP21.42■■□□□ 1.02
SMPD3-201ENST00000219334 TIMM10P62072 90 aa21.42■■□□□ 1.02
SMPD3-201ENST00000219334 HOXB7P09629 217 aa21.42■■□□□ 1.02
SMPD3-201ENST00000219334 DACT1Q9NYF0 836 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms