RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 KCNQ5Q9NR82 932 aa33.26■■■□□ 2.91
CHMP4B-201ENST00000217402 YDJCA8MPS7 323 aa33.25■■■□□ 2.91
CHMP4B-201ENST00000217402 ERC2O15083 957 aa33.25■■■□□ 2.91
CHMP4B-201ENST00000217402 HMG20BQ9P0W2 317 aa33.25■■■□□ 2.91
CHMP4B-201ENST00000217402 ZNRF3Q9ULT6 936 aa33.25■■■□□ 2.91
CHMP4B-201ENST00000217402 SBF1O95248 1867 aa33.25■■■□□ 2.91
CHMP4B-201ENST00000217402 C9orf131Q5VYM1 1079 aa33.24■■■□□ 2.91
CHMP4B-201ENST00000217402 SPATA5Q8NB90 893 aa33.24■■■□□ 2.91
CHMP4B-201ENST00000217402 DNAJC2Q99543 621 aaKnown RBP33.24■■■□□ 2.91
CHMP4B-201ENST00000217402 DENND2AQ9ULE3 1009 aa33.24■■■□□ 2.91
CHMP4B-201ENST00000217402 SEMA3EO15041 775 aa33.24■■■□□ 2.91
CHMP4B-201ENST00000217402 GLRX3O76003 335 aaKnown RBP33.24■■■□□ 2.91
CHMP4B-201ENST00000217402 OSBPL3Q9H4L5 887 aa33.23■■■□□ 2.91
CHMP4B-201ENST00000217402 AOX1Q06278 1338 aa33.23■■■□□ 2.91
CHMP4B-201ENST00000217402 CHD4Q14839 1912 aa33.22■■■□□ 2.91
CHMP4B-201ENST00000217402 GTF2IP78347 998 aa33.22■■■□□ 2.91
CHMP4B-201ENST00000217402 PPIL4Q8WUA2 492 aaKnown RBP eCLIP33.22■■■□□ 2.91
CHMP4B-201ENST00000217402 MYH13Q9UKX3 1938 aa33.22■■■□□ 2.91
CHMP4B-201ENST00000217402 ZAP70P43403 619 aa33.21■■■□□ 2.91
CHMP4B-201ENST00000217402 SCN9AQ15858 1988 aa33.21■■■□□ 2.91
CHMP4B-201ENST00000217402 RAD17O75943 681 aa33.2■■■□□ 2.91
CHMP4B-201ENST00000217402 MAP4K4O95819 1239 aaPredicted RBP33.2■■■□□ 2.91
CHMP4B-201ENST00000217402 HAUS7Q99871 368 aa33.2■■■□□ 2.9
CHMP4B-201ENST00000217402 TIAM2Q8IVF5 1701 aa33.19■■■□□ 2.9
CHMP4B-201ENST00000217402 EDC3Q96F86 508 aaKnown RBP33.19■■■□□ 2.9
CHMP4B-201ENST00000217402 AKAP11Q9UKA4 1901 aa33.19■■■□□ 2.9
CHMP4B-201ENST00000217402 DICER1Q9UPY3 1922 aaKnown RBP33.18■■■□□ 2.9
CHMP4B-201ENST00000217402 TTLL5Q6EMB2 1281 aa33.18■■■□□ 2.9
CHMP4B-201ENST00000217402 USP17L3A6NCW0 530 aa33.17■■■□□ 2.9
CHMP4B-201ENST00000217402 USP17L4A6NCW7 530 aa33.17■■■□□ 2.9
CHMP4B-201ENST00000217402 USP17L1Q7RTZ2 530 aa33.17■■■□□ 2.9
CHMP4B-201ENST00000217402 PDS5AQ29RF7 1337 aaKnown RBP33.17■■■□□ 2.9
CHMP4B-201ENST00000217402 FAM205AQ6ZU69 1335 aa33.17■■■□□ 2.9
CHMP4B-201ENST00000217402 FZD9O00144 591 aa33.17■■■□□ 2.9
CHMP4B-201ENST00000217402 GOLIM4O00461 696 aa33.17■■■□□ 2.9
CHMP4B-201ENST00000217402 TTC22Q5TAA0 569 aa33.17■■■□□ 2.9
CHMP4B-201ENST00000217402 MXD3Q9BW11 206 aa33.17■■■□□ 2.9
CHMP4B-201ENST00000217402 ZBTB22O15209 634 aa33.16■■■□□ 2.9
CHMP4B-201ENST00000217402 CYP2E1P05181 493 aaPredicted RBP33.16■■■□□ 2.9
CHMP4B-201ENST00000217402 EIF6P56537 245 aaKnown RBP33.16■■■□□ 2.9
CHMP4B-201ENST00000217402 CXCL9Q07325 125 aa33.16■■■□□ 2.9
CHMP4B-201ENST00000217402 TBC1D9Q6ZT07 1266 aa33.16■■■□□ 2.9
CHMP4B-201ENST00000217402 ANTXR1Q9H6X2 564 aa33.16■■■□□ 2.9
CHMP4B-201ENST00000217402 PAG1Q9NWQ8 432 aa33.16■■■□□ 2.9
CHMP4B-201ENST00000217402 ZNF541Q9H0D2 1346 aa33.15■■■□□ 2.9
CHMP4B-201ENST00000217402 STRIP1Q5VSL9 837 aa33.15■■■□□ 2.9
CHMP4B-201ENST00000217402 WDR66Q8TBY9 1149 aa33.15■■■□□ 2.9
CHMP4B-201ENST00000217402 PSMD14O00487 310 aa33.14■■■□□ 2.9
CHMP4B-201ENST00000217402 GSPT1P15170 499 aaKnown RBP33.14■■■□□ 2.9
CHMP4B-201ENST00000217402 MFSD14BQ5SR56 506 aa33.14■■■□□ 2.9
CHMP4B-201ENST00000217402 DACT2Q5SW24 774 aa33.13■■■□□ 2.89
CHMP4B-201ENST00000217402 CIAPIN1Q6FI81 312 aa33.13■■■□□ 2.89
CHMP4B-201ENST00000217402 ABCF2Q9UG63 623 aa33.13■■■□□ 2.89
CHMP4B-201ENST00000217402 TRIM6-TRIM34B2RNG4 842 aa33.13■■■□□ 2.89
CHMP4B-201ENST00000217402 PIH1D3Q9NQM4 214 aaKnown RBP33.13■■■□□ 2.89
CHMP4B-201ENST00000217402 CERS5Q8N5B7 392 aa33.11■■■□□ 2.89
CHMP4B-201ENST00000217402 TBC1D22AQ8WUA7 517 aa33.11■■■□□ 2.89
CHMP4B-201ENST00000217402 ZNF646O15015 1829 aaPredicted RBP33.11■■■□□ 2.89
CHMP4B-201ENST00000217402 PSME4Q14997 1843 aa33.11■■■□□ 2.89
CHMP4B-201ENST00000217402 TNIP1Q15025 636 aa33.1■■■□□ 2.89
CHMP4B-201ENST00000217402 GJA3Q9Y6H8 435 aa33.1■■■□□ 2.89
CHMP4B-201ENST00000217402 SALL1Q9NSC2 1324 aa33.1■■■□□ 2.89
CHMP4B-201ENST00000217402 RILPL2Q969X0 211 aa33.1■■■□□ 2.89
CHMP4B-201ENST00000217402 VIL1P09327 827 aaKnown RBP33.09■■■□□ 2.89
CHMP4B-201ENST00000217402 TTF1Q15361 905 aaPredicted RBP33.09■■■□□ 2.89
CHMP4B-201ENST00000217402 GRIK5Q16478 980 aa33.09■■■□□ 2.89
CHMP4B-201ENST00000217402 PRDX5P30044 214 aa33.08■■■□□ 2.89
CHMP4B-201ENST00000217402 RSBN1LQ6PCB5 846 aaPredicted RBP33.08■■■□□ 2.89
CHMP4B-201ENST00000217402 ZGPATQ8N5A5 531 aaKnown RBP33.08■■■□□ 2.89
CHMP4B-201ENST00000217402 LRP2BPQ9P2M1 347 aa33.08■■■□□ 2.89
CHMP4B-201ENST00000217402 ZBTB12Q9Y330 459 aaPredicted RBP33.08■■■□□ 2.89
CHMP4B-201ENST00000217402 IDH1O75874 414 aaKnown RBP33.07■■■□□ 2.88
CHMP4B-201ENST00000217402 CNTROBQ8N137 903 aa33.06■■■□□ 2.88
CHMP4B-201ENST00000217402 EVI5LQ96CN4 794 aa33.06■■■□□ 2.88
CHMP4B-201ENST00000217402 F8W031 263 aaPredicted RBP33.06■■■□□ 2.88
CHMP4B-201ENST00000217402 RAI14Q9P0K7 980 aa33.06■■■□□ 2.88
CHMP4B-201ENST00000217402 LDHBP07195 334 aaKnown RBP33.05■■■□□ 2.88
CHMP4B-201ENST00000217402 SDSP20132 328 aa33.05■■■□□ 2.88
CHMP4B-201ENST00000217402 FKBP1AP62942 108 aaKnown RBP33.05■■■□□ 2.88
CHMP4B-201ENST00000217402 ERICH6Q7L0X2 663 aa33.05■■■□□ 2.88
CHMP4B-201ENST00000217402 FSD1Q9BTV5 496 aa33.05■■■□□ 2.88
CHMP4B-201ENST00000217402 BMP2KLQ5H9B9 411 aa33.04■■■□□ 2.88
CHMP4B-201ENST00000217402 SPTY2D1Q68D10 685 aaPredicted RBP33.04■■■□□ 2.88
CHMP4B-201ENST00000217402 KIAA0825Q8IV33 1275 aa33.04■■■□□ 2.88
CHMP4B-201ENST00000217402 KBTBD3Q8NAB2 608 aa33.04■■■□□ 2.88
CHMP4B-201ENST00000217402 ZC3H4Q9UPT8 1303 aaKnown RBP33.04■■■□□ 2.88
CHMP4B-201ENST00000217402 MYO3BQ8WXR4 1341 aa33.03■■■□□ 2.88
CHMP4B-201ENST00000217402 MYO5AQ9Y4I1 1855 aaKnown RBP33.03■■■□□ 2.88
CHMP4B-201ENST00000217402 GPC2Q8N158 579 aa33.02■■■□□ 2.88
CHMP4B-201ENST00000217402 DDNO94850 711 aaPredicted RBP33.02■■■□□ 2.88
CHMP4B-201ENST00000217402 DZIP1Q86YF9 867 aaKnown RBP33.02■■■□□ 2.88
CHMP4B-201ENST00000217402 DOCK2Q92608 1830 aa33.02■■■□□ 2.88
CHMP4B-201ENST00000217402 GMPSP49915 693 aaPredicted RBP33.01■■■□□ 2.87
CHMP4B-201ENST00000217402 MAP3K12Q12852 859 aa33.01■■■□□ 2.87
CHMP4B-201ENST00000217402 TTF2Q9UNY4 1162 aaKnown RBP33.01■■■□□ 2.87
CHMP4B-201ENST00000217402 MECOMQ03112 1051 aa33■■■□□ 2.87
CHMP4B-201ENST00000217402 AGBL3Q8NEM8 1001 aa33■■■□□ 2.87
CHMP4B-201ENST00000217402 GMLQ99445 158 aa33■■■□□ 2.87
CHMP4B-201ENST00000217402 SUGT1Q9Y2Z0 365 aa33■■■□□ 2.87
CHMP4B-201ENST00000217402 DDX24Q9GZR7 859 aaKnown RBP eCLIP32.99■■■□□ 2.87
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms