RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 RAMP3O60896 148 aa11.85□□□□□ -0.51
SYNE2-228ENST00000639659 ZNF20P17024 532 aa11.85□□□□□ -0.51
SYNE2-228ENST00000639659 GNG10P50151 68 aa11.85□□□□□ -0.51
SYNE2-228ENST00000639659 CDC42P60953 191 aa11.85□□□□□ -0.51
SYNE2-228ENST00000639659 GNGT1P63211 74 aa11.85□□□□□ -0.51
SYNE2-228ENST00000639659 ZNF146Q15072 292 aa11.85□□□□□ -0.51
SYNE2-228ENST00000639659 PTGES3Q15185 160 aaKnown RBP11.85□□□□□ -0.51
SYNE2-228ENST00000639659 NKAPLQ5M9Q1 402 aa11.85□□□□□ -0.51
SYNE2-228ENST00000639659 Q6ZSR3 168 aa11.85□□□□□ -0.51
SYNE2-228ENST00000639659 SPATA24Q86W54 205 aa11.85□□□□□ -0.51
SYNE2-228ENST00000639659 FOXRED2Q8IWF2 684 aa11.85□□□□□ -0.51
SYNE2-228ENST00000639659 RDH10Q8IZV5 341 aa11.85□□□□□ -0.51
SYNE2-228ENST00000639659 C5orf56Q8N8D9 126 aa11.85□□□□□ -0.51
SYNE2-228ENST00000639659 NSL1Q96IY1 281 aa11.85□□□□□ -0.51
SYNE2-228ENST00000639659 SPACA5Q96QH8 159 aa11.85□□□□□ -0.51
SYNE2-228ENST00000639659 HMG20AQ9NP66 347 aa11.85□□□□□ -0.51
SYNE2-228ENST00000639659 ZFP57Q9NU63 452 aa11.85□□□□□ -0.51
SYNE2-228ENST00000639659 AMMECR1Q9Y4X0 333 aaPredicted RBP11.85□□□□□ -0.51
SYNE2-228ENST00000639659 OOSP1A8MZH6 123 aa11.84□□□□□ -0.51
SYNE2-228ENST00000639659 CD34P28906 385 aa11.84□□□□□ -0.51
SYNE2-228ENST00000639659 OR10H4Q8NGA5 316 aa11.84□□□□□ -0.51
SYNE2-228ENST00000639659 OR5M8Q8NGP6 311 aa11.84□□□□□ -0.51
SYNE2-228ENST00000639659 ADAT3Q96EY9 351 aaPredicted RBP11.84□□□□□ -0.51
SYNE2-228ENST00000639659 HRASLS5Q96KN8 279 aa11.84□□□□□ -0.51
SYNE2-228ENST00000639659 PPIL3Q9H2H8 161 aaKnown RBP11.84□□□□□ -0.51
SYNE2-228ENST00000639659 IGKV1-9A0A0C4DH69 117 aa11.83□□□□□ -0.52
SYNE2-228ENST00000639659 A0A1W2PQL4 384 aaPredicted RBP11.83□□□□□ -0.52
SYNE2-228ENST00000639659 METTL15A6NJ78 407 aa11.83□□□□□ -0.52
SYNE2-228ENST00000639659 ZNF729A6NN14 1252 aaPredicted RBP11.83□□□□□ -0.52
SYNE2-228ENST00000639659 SEC14L6B5MCN3 397 aa11.83□□□□□ -0.52
SYNE2-228ENST00000639659 LY6LH3BQJ8 138 aa11.83□□□□□ -0.52
SYNE2-228ENST00000639659 IGKV1D-33P01593 117 aa11.83□□□□□ -0.52
SYNE2-228ENST00000639659 IGKV1-33P01594 117 aa11.83□□□□□ -0.52
SYNE2-228ENST00000639659 RPLP1P05386 114 aaKnown RBP11.83□□□□□ -0.52
SYNE2-228ENST00000639659 ATF1P18846 271 aa11.83□□□□□ -0.52
SYNE2-228ENST00000639659 DIAPH2-AS1Q14236 149 aa11.83□□□□□ -0.52
SYNE2-228ENST00000639659 C9orf66Q5T8R8 295 aa11.83□□□□□ -0.52
SYNE2-228ENST00000639659 NXNL2Q5VZ03 156 aa11.83□□□□□ -0.52
SYNE2-228ENST00000639659 LHFPL2Q6ZUX7 228 aa11.83□□□□□ -0.52
SYNE2-228ENST00000639659 FAM220AQ7Z4H9 259 aa11.83□□□□□ -0.52
SYNE2-228ENST00000639659 GID4Q8IVV7 300 aa11.83□□□□□ -0.52
SYNE2-228ENST00000639659 PRSS35Q8N3Z0 413 aa11.83□□□□□ -0.52
SYNE2-228ENST00000639659 STPG2Q8N412 459 aa11.83□□□□□ -0.52
SYNE2-228ENST00000639659 OR9G1Q8NH87 305 aa11.83□□□□□ -0.52
SYNE2-228ENST00000639659 TMEM163Q8TC26 289 aa11.83□□□□□ -0.52
SYNE2-228ENST00000639659 PP6455Q8WZ26 134 aa11.83□□□□□ -0.52
SYNE2-228ENST00000639659 CORO2AQ92828 525 aa11.83□□□□□ -0.52
SYNE2-228ENST00000639659 FGGYQ96C11 551 aa11.83□□□□□ -0.52
SYNE2-228ENST00000639659 COQ2Q96H96 371 aa11.83□□□□□ -0.52
SYNE2-228ENST00000639659 THTPAQ9BU02 230 aa11.83□□□□□ -0.52
SYNE2-228ENST00000639659 SEBOXQ9HB31 216 aaPredicted RBP11.83□□□□□ -0.52
SYNE2-228ENST00000639659 PCDHB16Q9NRJ7 776 aa11.83□□□□□ -0.52
SYNE2-228ENST00000639659 KRT84Q9NSB2 600 aa11.83□□□□□ -0.52
SYNE2-228ENST00000639659 GAR1Q9NY12 217 aaKnown RBP11.83□□□□□ -0.52
SYNE2-228ENST00000639659 GNG8Q9UK08 70 aa11.83□□□□□ -0.52
SYNE2-228ENST00000639659 LSM4Q9Y4Z0 139 aaKnown RBP11.83□□□□□ -0.52
SYNE2-228ENST00000639659 IGKV1-12A0A0C4DH73 117 aa11.82□□□□□ -0.52
SYNE2-228ENST00000639659 A0A1W2PPI3 338 aa11.82□□□□□ -0.52
SYNE2-228ENST00000639659 NCBP2LA6PVI3 153 aaKnown RBP11.82□□□□□ -0.52
SYNE2-228ENST00000639659 MITFO75030 526 aaPredicted RBP11.82□□□□□ -0.52
SYNE2-228ENST00000639659 FKBP6O75344 327 aa11.82□□□□□ -0.52
SYNE2-228ENST00000639659 FAM107AO95990 144 aa11.82□□□□□ -0.52
SYNE2-228ENST00000639659 IGKV1D-12P01611 117 aa11.82□□□□□ -0.52
SYNE2-228ENST00000639659 UBCP0CG48 685 aaKnown RBP11.82□□□□□ -0.52
SYNE2-228ENST00000639659 PRKACBP22694 351 aa11.82□□□□□ -0.52
SYNE2-228ENST00000639659 SLC6A1P30531 599 aa11.82□□□□□ -0.52
SYNE2-228ENST00000639659 ATP6V1E1P36543 226 aa11.82□□□□□ -0.52
SYNE2-228ENST00000639659 KIR3DL2P43630 455 aa11.82□□□□□ -0.52
SYNE2-228ENST00000639659 DAPP51397 102 aa11.82□□□□□ -0.52
SYNE2-228ENST00000639659 GYS2P54840 703 aa11.82□□□□□ -0.52
SYNE2-228ENST00000639659 GP2P55259 537 aaKnown RBP11.82□□□□□ -0.52
SYNE2-228ENST00000639659 PDZK1IP1Q13113 114 aa11.82□□□□□ -0.52
SYNE2-228ENST00000639659 C17orf58Q2M2W7 97 aa11.82□□□□□ -0.52
SYNE2-228ENST00000639659 TP53I3Q53FA7 332 aa11.82□□□□□ -0.52
SYNE2-228ENST00000639659 AADACL4Q5VUY2 407 aa11.82□□□□□ -0.52
SYNE2-228ENST00000639659 COMMD1Q8N668 190 aa11.82□□□□□ -0.52
SYNE2-228ENST00000639659 DNAAF1Q8NEP3 725 aa11.82□□□□□ -0.52
SYNE2-228ENST00000639659 KIRREL1Q96J84 757 aa11.82□□□□□ -0.52
SYNE2-228ENST00000639659 OPALINQ96PE5 141 aa11.82□□□□□ -0.52
SYNE2-228ENST00000639659 IGHV3-72A0A0B4J1Y9 119 aa11.81□□□□□ -0.52
SYNE2-228ENST00000639659 A0A1W2PPE3 182 aa11.81□□□□□ -0.52
SYNE2-228ENST00000639659 AQP12BA6NM10 295 aa11.81□□□□□ -0.52
SYNE2-228ENST00000639659 LINC01548A6NM66 108 aa11.81□□□□□ -0.52
SYNE2-228ENST00000639659 J3QR06 171 aa11.81□□□□□ -0.52
SYNE2-228ENST00000639659 SLC33A1O00400 549 aaPredicted RBP11.81□□□□□ -0.52
SYNE2-228ENST00000639659 DEGS1O15121 323 aa11.81□□□□□ -0.52
SYNE2-228ENST00000639659 REG1BP48304 166 aa11.81□□□□□ -0.52
SYNE2-228ENST00000639659 MADCAM1Q13477 382 aa11.81□□□□□ -0.52
SYNE2-228ENST00000639659 CXorf66Q5JRM2 361 aaPredicted RBP11.81□□□□□ -0.52
SYNE2-228ENST00000639659 TEX38Q6PEX7 206 aa11.81□□□□□ -0.52
SYNE2-228ENST00000639659 MOB3BQ86TA1 216 aa11.81□□□□□ -0.52
SYNE2-228ENST00000639659 THNSL2Q86YJ6 484 aa11.81□□□□□ -0.52
SYNE2-228ENST00000639659 AQP12AQ8IXF9 295 aa11.81□□□□□ -0.52
SYNE2-228ENST00000639659 CCDC54Q8NEL0 328 aa11.81□□□□□ -0.52
SYNE2-228ENST00000639659 Q8NFD4 153 aa11.81□□□□□ -0.52
SYNE2-228ENST00000639659 OR13C9Q8NGT0 318 aa11.81□□□□□ -0.52
SYNE2-228ENST00000639659 OR10X1Q8NGY0 326 aa11.81□□□□□ -0.52
SYNE2-228ENST00000639659 OR8U1Q8NH10 309 aa11.81□□□□□ -0.52
SYNE2-228ENST00000639659 MUC7Q8TAX7 377 aa11.81□□□□□ -0.52
SYNE2-228ENST00000639659 DNAJC9Q8WXX5 260 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms