RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 RPS4Y1P22090 263 aaKnown RBP5.43□□□□□ -1.54
SCN1A-217ENST00000637988 TFPI2P48307 235 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 TMEM78Q5T7P6 136 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 ZG16BQ96DA0 208 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 TTTY12Q9BZ98 90 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 SLC25A19Q9HC21 320 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 DOK5Q9P104 306 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 CACNA1DQ01668 2161 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 UPK1AO00322 258 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 EREGO14944 169 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 CIDEAO60543 219 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 KLF7O75840 302 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-217ENST00000637988 CCL2P13500 99 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 S100A11P31949 105 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 RPS4XP62701 263 aaKnown RBP5.43□□□□□ -1.54
SCN1A-217ENST00000637988 ISL2Q96A47 359 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 TMEM167BQ9NRX6 74 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 USF1P22415 310 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-217ENST00000637988 FABP9Q0Z7S8 132 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 COL13A1Q5TAT6 717 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-217ENST00000637988 SLC35E4Q6ICL7 350 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 SCGB1D4Q6XE38 83 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 OR1L8Q8NGR8 309 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 RFESDQ8TAC1 157 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 RASL10BQ96S79 203 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 RANGRFQ9HD47 186 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-217ENST00000637988 TMEM56-RWDD3S4R434 201 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 POLEQ07864 2286 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 B9A039 149 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 MC5RP33032 325 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 LPAR6P43657 344 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 HERPUD1Q15011 391 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 ATP6V1FQ16864 119 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 C20orf196Q8IYI0 205 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 ARID1AO14497 2285 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 RAB29O14966 203 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 TGOLN2O43493 480 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 RHBDL1O75783 438 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 LALBAP00709 142 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 TNFSF10P50591 281 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 ZNF154Q13106 437 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 SLC51BQ86UW2 128 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 SIAH3Q8IW03 269 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 LRP12Q9Y561 859 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 FITM1A5D6W6 292 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 SNRPGP15A8MWD9 76 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 SHISA8B8ZZ34 492 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 GYPAP02724 150 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 OR5AL1P0C617 328 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 CLDN18P56856 261 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 KISS1Q15726 138 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 LY6EQ16553 131 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 CCDC71Q8IV32 467 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-217ENST00000637988 C3orf56Q8N813 242 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 PATE3B3GLJ2 98 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 CORTO00230 105 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 PHOX2AO14813 284 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 ZDHHC11BP0C7U3 371 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 COMPP49747 757 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-217ENST00000637988 WDR25Q64LD2 544 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-217ENST00000637988 ETV3LQ6ZN32 361 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 NKAIN4Q8IVV8 208 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 RTN4IP1Q8WWV3 396 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-217ENST00000637988 GLI3P10071 1580 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 IGHV3-43A0A0B4J1X8 118 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 TRDCB7Z8K6 153 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 RNASE1P07998 156 aaKnown RBP5.42□□□□□ -1.54
SCN1A-217ENST00000637988 IGHV3-43DP0DP04 118 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 RPL12P30050 165 aaKnown RBP5.42□□□□□ -1.54
SCN1A-217ENST00000637988 ADIPOQQ15848 244 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 ZXDCQ2QGD7 858 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-217ENST00000637988 SLC23A3Q6PIS1 610 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 WNT2BQ93097 391 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 RPP25Q9BUL9 199 aaKnown RBP5.42□□□□□ -1.54
SCN1A-217ENST00000637988 WASHC3Q9Y3C0 194 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 TMED3Q9Y3Q3 217 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 CHST1O43916 411 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 GPANK1O95872 356 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 EPPINO95925 133 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 SBK3P0C264 359 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 NKX2-5P52952 324 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-217ENST00000637988 RANP62826 216 aaKnown RBP5.42□□□□□ -1.54
SCN1A-217ENST00000637988 B4GALNT1Q00973 533 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 REC114Q7Z4M0 266 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 OR10A7Q8NGE5 316 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 NEU4Q8WWR8 484 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-217ENST00000637988 BOLA1Q9Y3E2 137 aa5.42□□□□□ -1.54
SCN1A-217ENST00000637988 EP300Q09472 2414 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-217ENST00000637988 AKR7A2O43488 359 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 VDAC2P45880 294 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-217ENST00000637988 DAPP51397 102 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 C3AR1Q16581 482 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 SLC16A13Q7RTY0 426 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 MDP1Q86V88 176 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 OR5M8Q8NGP6 311 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 TMEM174Q8WUU8 243 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 SLC25A28Q96A46 364 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 EEF1AKMT3Q96AZ1 226 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 SORT1Q99523 831 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 NIPSNAP1Q9BPW8 284 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms