RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 BPIFA4PQ86YQ2 179 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 TMEM251Q8N6I4 163 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 OR11H1Q8NG94 326 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 OR11H2Q8NH07 326 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 ADOQ96SZ5 270 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 PIMREGQ9BSJ6 248 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 HSPB8Q9UJY1 196 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 RCL1Q9Y2P8 373 aaKnown RBP5.06□□□□□ -1.6
SCN1A-216ENST00000637968 SPCS1Q9Y6A9 102 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 KIAA1551Q9HCM1 1747 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 TRAV27A0A087WT01 109 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 TMEM265A0A087WTH1 108 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 IGHV2-26A0A0B4J1V2 119 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 C7orf71A4D174 169 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 S1PR2O95136 353 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 NUDT14O95848 222 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 ITGBL1O95965 494 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-216ENST00000637968 EDN1P05305 212 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 MGST1P10620 155 aaKnown RBP5.05□□□□□ -1.6
SCN1A-216ENST00000637968 HERV-K104P61576 105 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 GNB2P62879 340 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 IHHQ14623 411 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 PRICKLE4Q2TBC4 344 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 CEACAM21Q3KPI0 293 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 CCDC71LQ8N9Z2 235 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 OR13G1Q8NGZ3 307 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 LINC00470Q9BZP3 86 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 PLEKHF2Q9H8W4 249 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 CYSLTR1Q9Y271 337 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 ZNF835Q9Y2P0 537 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 UFC1Q9Y3C8 167 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 TSSC4Q9Y5U2 329 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-216ENST00000637968 MYO9BQ13459 2157 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 TRAV9-2A0A087WT02 112 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-216ENST00000637968 HIDE1A8MVS5 230 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 K7N7A8 449 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 GYPAP02724 150 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 MPC1LP0DKB6 136 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 LYL1P12980 280 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 HTR1DP28221 377 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 RRADP55042 308 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 MTCP1P56278 107 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 MPV17L2Q567V2 206 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 CARD17Q5XLA6 110 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 COLCA1Q6ZS62 124 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 ZG16BQ96DA0 208 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 TMEM191AQ9H0A3 160 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 WSB2Q9NYS7 404 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-216ENST00000637968 MRPL27Q9P0M9 148 aaKnown RBP5.05□□□□□ -1.6
SCN1A-216ENST00000637968 IGLC7A0M8Q6 106 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 SLC16A7O60669 478 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 ZNF737O75373 536 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 HIST1H1EP10412 219 aaKnown RBP5.05□□□□□ -1.6
SCN1A-216ENST00000637968 SSR2P43308 183 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 GPR6P46095 362 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-216ENST00000637968 GFRA1P56159 465 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 EXOSC7Q15024 291 aaKnown RBP5.05□□□□□ -1.6
SCN1A-216ENST00000637968 C9orf50Q5SZB4 431 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 FAM162BQ5T6X4 162 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 CYP2G1PQ6ZSU1 146 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 CPEB2Q7Z5Q1 589 aaKnown RBP5.05□□□□□ -1.6
SCN1A-216ENST00000637968 MUC15Q8N387 334 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 OR4D11Q8NGI4 311 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 CLDND2Q8NHS1 167 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 RNF133Q8WVZ7 376 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 WDR61Q9GZS3 305 aaKnown RBP5.05□□□□□ -1.6
SCN1A-216ENST00000637968 NRN1Q9NPD7 142 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 NAT8BQ9UHF3 227 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 DAPP1Q9UN19 280 aa5.05□□□□□ -1.6
SCN1A-216ENST00000637968 HMGN4O00479 90 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 PIN1P1O15428 100 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 MPPED1O15442 326 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 HIST1H1CP16403 213 aaKnown RBP5.04□□□□□ -1.6
SCN1A-216ENST00000637968 CDKN1AP38936 164 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 NKX2-1P43699 371 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-216ENST00000637968 CLDN15P56746 228 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 SRSF6Q13247 344 aaKnown RBP5.04□□□□□ -1.6
SCN1A-216ENST00000637968 ANKRD55Q3KP44 614 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 IER5LQ5T953 404 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 Q6ZWC4 215 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 SAXO1Q8IYX7 474 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 OR2C3Q8N628 320 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 OR51G1Q8NGK1 321 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 OR10AG1Q8NH19 301 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 BLNKQ8WV28 456 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 KLK6Q92876 244 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 BADQ92934 168 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 NKX2-4Q9H2Z4 354 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 ST20Q9HBF5 79 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 GPR27Q9NS67 375 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 KLHL13Q9P2N7 655 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 UBE2J1Q9Y385 318 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-216ENST00000637968 RHBDD3Q9Y3P4 386 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 FOCADQ5VW36 1801 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 GLI3P10071 1580 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 TMEM229AB2RXF0 380 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 ALG1L2C9J202 215 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 CA1P00915 261 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-216ENST00000637968 HIST1H1TP22492 207 aaPredicted RBP5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms