RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 PRELID3BQ9Y3B1 194 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 SHANK1Q9Y566 2161 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 DCHS1Q96JQ0 3298 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 FAM90A10PA6NDY2 464 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 FAM90A18PA6NE21 464 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 FAM90A16PA6NEW6 464 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 FAM90A20PA6NIJ5 464 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 FAM90A8PA6NJQ4 464 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 FAM90A7PA6NKC0 464 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 FAM90A22PA8MWA6 464 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 FAM90A12PA8MX19 464 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 FAM90A5PA8MXJ8 464 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 FAM90A23PA8MXZ1 464 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 KCNAB3O43448 404 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 TNFSF13O75888 250 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 CNOT4O95628 575 aaKnown RBP13.36□□□□□ -0.27
CLN3-251ENST00000636853 CTSDP07339 412 aaPredicted RBP13.36□□□□□ -0.27
CLN3-251ENST00000636853 FAM90A15PP0C7V4 464 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 FAM90A13PP0C7W8 464 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 FAM90A14PP0C7W9 464 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 FAM90A24PP0C7X0 464 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 HOXB1P14653 301 aaPredicted RBP13.36□□□□□ -0.27
CLN3-251ENST00000636853 HOXC12P31275 282 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 UCP2P55851 309 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 ALKAL2Q6UX46 152 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 Q6ZS92 163 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 SEM1Q6ZVN7 128 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 OR51I2Q9H344 312 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 METTL8Q9H825 291 aaKnown RBP13.36□□□□□ -0.27
CLN3-251ENST00000636853 RAB18Q9NP72 206 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 MBD2Q9UBB5 411 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 FBXO9Q9UK97 447 aaPredicted RBP13.36□□□□□ -0.27
CLN3-251ENST00000636853 A0A0B4J2A0 478 aa13.35□□□□□ -0.27
CLN3-251ENST00000636853 IGHV3-64DA0A0J9YX35 117 aa13.35□□□□□ -0.27
CLN3-251ENST00000636853 CRHP06850 196 aa13.35□□□□□ -0.27
CLN3-251ENST00000636853 HOXB5P09067 269 aa13.35□□□□□ -0.27
CLN3-251ENST00000636853 PMELP40967 661 aa13.35□□□□□ -0.27
CLN3-251ENST00000636853 SHEQ5VZ18 495 aa13.35□□□□□ -0.27
CLN3-251ENST00000636853 WDR86Q86TI4 376 aa13.35□□□□□ -0.27
CLN3-251ENST00000636853 CXorf67Q86X51 503 aaPredicted RBP13.35□□□□□ -0.27
CLN3-251ENST00000636853 RBMXL3Q8N7X1 1067 aaKnown RBP13.35□□□□□ -0.27
CLN3-251ENST00000636853 SNIP1Q8TAD8 396 aaKnown RBP13.35□□□□□ -0.27
CLN3-251ENST00000636853 THAP6Q8TBB0 222 aa13.35□□□□□ -0.27
CLN3-251ENST00000636853 NEK7Q8TDX7 302 aa13.35□□□□□ -0.27
CLN3-251ENST00000636853 POM121Q96HA1 1249 aa13.35□□□□□ -0.27
CLN3-251ENST00000636853 PLSCR4Q9NRQ2 329 aa13.35□□□□□ -0.27
CLN3-251ENST00000636853 SHPKQ9UHJ6 478 aa13.35□□□□□ -0.27
CLN3-251ENST00000636853 LHX6Q9UPM6 363 aa13.35□□□□□ -0.27
CLN3-251ENST00000636853 WDR1O75083 606 aa13.34□□□□□ -0.27
CLN3-251ENST00000636853 IFNA2P01563 188 aa13.34□□□□□ -0.27
CLN3-251ENST00000636853 ZNF728P0DKX0 622 aa13.34□□□□□ -0.27
CLN3-251ENST00000636853 CBR1P16152 277 aa13.34□□□□□ -0.27
CLN3-251ENST00000636853 MPV17LQ2QL34 196 aa13.34□□□□□ -0.27
CLN3-251ENST00000636853 IGSF11Q5DX21 431 aa13.34□□□□□ -0.27
CLN3-251ENST00000636853 FAM219AQ8IW50 185 aa13.34□□□□□ -0.27
CLN3-251ENST00000636853 STARD4Q96DR4 205 aa13.34□□□□□ -0.27
CLN3-251ENST00000636853 OR10C1Q96KK4 312 aa13.34□□□□□ -0.27
CLN3-251ENST00000636853 NMES1Q9C002 83 aa13.34□□□□□ -0.27
CLN3-251ENST00000636853 RCC2Q9P258 522 aaKnown RBP13.34□□□□□ -0.27
CLN3-251ENST00000636853 SPTBN2O15020 2390 aa13.34□□□□□ -0.27
CLN3-251ENST00000636853 TEX13DA0A0J9YY54 714 aaPredicted RBP13.34□□□□□ -0.27
CLN3-251ENST00000636853 RNF222A6NCQ9 220 aa13.34□□□□□ -0.27
CLN3-251ENST00000636853 J3QW42 95 aa13.34□□□□□ -0.27
CLN3-251ENST00000636853 DNASE2O00115 360 aaPredicted RBP13.34□□□□□ -0.27
CLN3-251ENST00000636853 SPDEFO95238 335 aa13.34□□□□□ -0.27
CLN3-251ENST00000636853 H2AFB1P0C5Y9 115 aa13.34□□□□□ -0.27
CLN3-251ENST00000636853 PSMB6P28072 239 aa13.34□□□□□ -0.27
CLN3-251ENST00000636853 PIGPP57054 158 aa13.34□□□□□ -0.27
CLN3-251ENST00000636853 IL24Q13007 206 aa13.34□□□□□ -0.27
CLN3-251ENST00000636853 PSG7Q13046 419 aa13.34□□□□□ -0.27
CLN3-251ENST00000636853 SGPP2Q8IWX5 399 aa13.34□□□□□ -0.27
CLN3-251ENST00000636853 MARC2Q969Z3 335 aa13.34□□□□□ -0.27
CLN3-251ENST00000636853 VRK1Q99986 396 aaPredicted RBP13.34□□□□□ -0.27
CLN3-251ENST00000636853 PROCRQ9UNN8 238 aa13.34□□□□□ -0.27
CLN3-251ENST00000636853 CRYM-AS1A6NIL9 109 aa13.33□□□□□ -0.28
CLN3-251ENST00000636853 HS3ST1O14792 307 aa13.33□□□□□ -0.28
CLN3-251ENST00000636853 IGKV3-15P01624 115 aa13.33□□□□□ -0.28
CLN3-251ENST00000636853 RBMXP38159 391 aaKnown RBP13.33□□□□□ -0.28
CLN3-251ENST00000636853 MPV17P39210 176 aa13.33□□□□□ -0.28
CLN3-251ENST00000636853 B2MP61769 119 aa13.33□□□□□ -0.28
CLN3-251ENST00000636853 PLEKHN1Q494U1 663 aaPredicted RBP13.33□□□□□ -0.28
CLN3-251ENST00000636853 PHLDA2Q53GA4 152 aa13.33□□□□□ -0.28
CLN3-251ENST00000636853 FAM58AQ8N1B3 248 aa13.33□□□□□ -0.28
CLN3-251ENST00000636853 RTL8AQ9BWD3 113 aa13.33□□□□□ -0.28
CLN3-251ENST00000636853 COL25A1Q9BXS0 654 aaPredicted RBP13.33□□□□□ -0.28
CLN3-251ENST00000636853 A0A0D9SG52 128 aa13.33□□□□□ -0.28
CLN3-251ENST00000636853 AADACP22760 399 aa13.33□□□□□ -0.28
CLN3-251ENST00000636853 RPRMLQ8N4K4 120 aa13.33□□□□□ -0.28
CLN3-251ENST00000636853 KCNRGQ8N5I3 272 aa13.33□□□□□ -0.28
CLN3-251ENST00000636853 SUMF2Q8NBJ7 301 aa13.33□□□□□ -0.28
CLN3-251ENST00000636853 C1orf162Q8NEQ5 155 aaPredicted RBP13.33□□□□□ -0.28
CLN3-251ENST00000636853 RDH5Q92781 318 aa13.33□□□□□ -0.28
CLN3-251ENST00000636853 ADAT1Q9BUB4 502 aaKnown RBP13.33□□□□□ -0.28
CLN3-251ENST00000636853 PKIBQ9C010 78 aa13.33□□□□□ -0.28
CLN3-251ENST00000636853 MS4A7Q9GZW8 240 aaPredicted RBP13.33□□□□□ -0.28
CLN3-251ENST00000636853 Q9N2K0 584 aa13.33□□□□□ -0.28
CLN3-251ENST00000636853 PRSS44E7EML9 344 aa13.32□□□□□ -0.28
CLN3-251ENST00000636853 J3QT63 122 aa13.32□□□□□ -0.28
CLN3-251ENST00000636853 NAPSAO96009 420 aa13.32□□□□□ -0.28
CLN3-251ENST00000636853 CGAP01215 116 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms