RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 SNU13P55769 128 aaKnown RBP11.19□□□□□ -0.62
CLN3-249ENST00000636685 OR8H3Q8N146 312 aa11.19□□□□□ -0.62
CLN3-249ENST00000636685 ZNF454Q8N9F8 522 aa11.19□□□□□ -0.62
CLN3-249ENST00000636685 OR9Q2Q8NGE9 314 aa11.19□□□□□ -0.62
CLN3-249ENST00000636685 NABP2Q9BQ15 211 aa11.19□□□□□ -0.62
CLN3-249ENST00000636685 ARMC1Q9NVT9 282 aa11.19□□□□□ -0.62
CLN3-249ENST00000636685 GLS2Q9UI32 602 aa11.19□□□□□ -0.62
CLN3-249ENST00000636685 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.19□□□□□ -0.62
CLN3-249ENST00000636685 DYNC1H1Q14204 4646 aaKnown RBP11.19□□□□□ -0.62
CLN3-249ENST00000636685 IGKV1-27A0A075B6S5 117 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 ACOD1A6NK06 481 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 RIIAD1A6NNX1 92 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 C12orf77C9JDV5 145 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 J3QR06 171 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 SIRPB1O00241 398 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 HSPA12AO43301 675 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 IFNGP01579 166 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 OR8U9P0C7N5 309 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 CALB2P22676 271 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 RRM2P31350 389 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 RAB7AP51149 207 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 AESQ08117 197 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 MADCAM1Q13477 382 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 EBI3Q14213 229 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 MAPRE2Q15555 327 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 C17orf58Q2M2W7 97 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 RNLSQ5VYX0 342 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 TMEM65Q6PI78 240 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 RASSF6Q6ZTQ3 369 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 ARPINQ7Z6K5 226 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 Q8N6K4 173 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 BTBD10Q9BSF8 475 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 OR51V1Q9H2C8 321 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 HIPK2Q9H2X6 1198 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 SEBOXQ9HB31 216 aaPredicted RBP11.18□□□□□ -0.62
CLN3-249ENST00000636685 ING3Q9NXR8 418 aa11.18□□□□□ -0.62
CLN3-249ENST00000636685 SOX14O95416 240 aa11.17□□□□□ -0.62
CLN3-249ENST00000636685 ATP6V1G2O95670 118 aa11.17□□□□□ -0.62
CLN3-249ENST00000636685 ZNF3P17036 446 aa11.17□□□□□ -0.62
CLN3-249ENST00000636685 HCCSP53701 268 aa11.17□□□□□ -0.62
CLN3-249ENST00000636685 ZP1P60852 638 aa11.17□□□□□ -0.62
CLN3-249ENST00000636685 SAMD4BQ5PRF9 694 aaKnown RBP11.17□□□□□ -0.62
CLN3-249ENST00000636685 SLC25A26Q70HW3 274 aa11.17□□□□□ -0.62
CLN3-249ENST00000636685 ARHGAP24Q8N264 748 aa11.17□□□□□ -0.62
CLN3-249ENST00000636685 SLC7A6OSQ96CW6 309 aaPredicted RBP11.17□□□□□ -0.62
CLN3-249ENST00000636685 KIRREL1Q96J84 757 aa11.17□□□□□ -0.62
CLN3-249ENST00000636685 OR4C12Q96R67 309 aa11.17□□□□□ -0.62
CLN3-249ENST00000636685 ST6GALNAC5Q9BVH7 336 aa11.17□□□□□ -0.62
CLN3-249ENST00000636685 TMED9Q9BVK6 235 aa11.17□□□□□ -0.62
CLN3-249ENST00000636685 OR51J1Q9H342 316 aa11.17□□□□□ -0.62
CLN3-249ENST00000636685 TUBA4BQ9H853 241 aa11.17□□□□□ -0.62
CLN3-249ENST00000636685 PLSCR3Q9NRY6 295 aa11.17□□□□□ -0.62
CLN3-249ENST00000636685 RBFOX1Q9NWB1 397 aaKnown RBP11.17□□□□□ -0.62
CLN3-249ENST00000636685 ACTR3BQ9P1U1 418 aa11.17□□□□□ -0.62
CLN3-249ENST00000636685 BAIAP2Q9UQB8 552 aa11.17□□□□□ -0.62
CLN3-249ENST00000636685 DNAH6Q9C0G6 4158 aa11.17□□□□□ -0.62
CLN3-249ENST00000636685 PKHD1P08F94 4074 aa11.16□□□□□ -0.62
CLN3-249ENST00000636685 ODAMA1E959 279 aa11.16□□□□□ -0.62
CLN3-249ENST00000636685 LINC01619G3V211 115 aa11.16□□□□□ -0.62
CLN3-249ENST00000636685 MPZL2O60487 215 aa11.16□□□□□ -0.62
CLN3-249ENST00000636685 DEDDO75618 318 aa11.16□□□□□ -0.62
CLN3-249ENST00000636685 BRI3O95415 125 aa11.16□□□□□ -0.62
CLN3-249ENST00000636685 SEMG1P04279 462 aa11.16□□□□□ -0.62
CLN3-249ENST00000636685 KIR3DL2P43630 455 aa11.16□□□□□ -0.62
CLN3-249ENST00000636685 NPBWR2P48146 333 aa11.16□□□□□ -0.62
CLN3-249ENST00000636685 MNAT1P51948 309 aa11.16□□□□□ -0.62
CLN3-249ENST00000636685 PITPNAQ00169 270 aa11.16□□□□□ -0.62
CLN3-249ENST00000636685 MOB3BQ86TA1 216 aa11.16□□□□□ -0.62
CLN3-249ENST00000636685 ENTHD1Q8IYW4 607 aa11.16□□□□□ -0.62
CLN3-249ENST00000636685 OR2T33Q8NG76 320 aa11.16□□□□□ -0.62
CLN3-249ENST00000636685 S1PR3Q99500 378 aa11.16□□□□□ -0.62
CLN3-249ENST00000636685 RASL11BQ9BPW5 248 aa11.16□□□□□ -0.62
CLN3-249ENST00000636685 KCTD14Q9BQ13 255 aaPredicted RBP11.16□□□□□ -0.62
CLN3-249ENST00000636685 CMC2Q9NRP2 79 aa11.16□□□□□ -0.62
CLN3-249ENST00000636685 SAMD4AQ9UPU9 718 aaKnown RBP11.16□□□□□ -0.62
CLN3-249ENST00000636685 WSB1Q9Y6I7 421 aa11.16□□□□□ -0.62
CLN3-249ENST00000636685 V9GYS6 101 aa11.16□□□□□ -0.62
CLN3-249ENST00000636685 IGHV4OR15-8A0A075B7B6 117 aa11.15□□□□□ -0.62
CLN3-249ENST00000636685 A0A087WW49 117 aa11.15□□□□□ -0.62
CLN3-249ENST00000636685 FUOMA2VDF0 154 aa11.15□□□□□ -0.62
CLN3-249ENST00000636685 ENTPD6O75354 484 aa11.15□□□□□ -0.62
CLN3-249ENST00000636685 GASTP01350 101 aa11.15□□□□□ -0.62
CLN3-249ENST00000636685 TTRP02766 147 aa11.15□□□□□ -0.62
CLN3-249ENST00000636685 IGF1P05019 195 aa11.15□□□□□ -0.62
CLN3-249ENST00000636685 ALOX5APP20292 161 aa11.15□□□□□ -0.62
CLN3-249ENST00000636685 BCL3P20749 454 aa11.15□□□□□ -0.62
CLN3-249ENST00000636685 PPIFP30405 207 aaKnown RBP11.15□□□□□ -0.62
CLN3-249ENST00000636685 REG1BP48304 166 aa11.15□□□□□ -0.62
CLN3-249ENST00000636685 GNG10P50151 68 aa11.15□□□□□ -0.62
CLN3-249ENST00000636685 MFGE8Q08431 387 aaPredicted RBP11.15□□□□□ -0.62
CLN3-249ENST00000636685 ZNF146Q15072 292 aa11.15□□□□□ -0.62
CLN3-249ENST00000636685 GLYATQ6IB77 296 aa11.15□□□□□ -0.62
CLN3-249ENST00000636685 FAM58AQ8N1B3 248 aa11.15□□□□□ -0.62
CLN3-249ENST00000636685 OR14K1Q8NGZ2 314 aa11.15□□□□□ -0.62
CLN3-249ENST00000636685 OR2T10Q8NGZ9 312 aa11.15□□□□□ -0.62
CLN3-249ENST00000636685 ARL8BQ9NVJ2 186 aa11.15□□□□□ -0.62
CLN3-249ENST00000636685 NUFIP1Q9UHK0 495 aaKnown RBP11.15□□□□□ -0.62
CLN3-249ENST00000636685 PSG11Q9UQ72 335 aa11.15□□□□□ -0.62
CLN3-249ENST00000636685 IGHV1-3A0A0C4DH29 117 aa11.14□□□□□ -0.63
CLN3-249ENST00000636685 A0A1B0GTI1 187 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms