RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 OR56B2PQ8NGI1 322 aa10.98□□□□□ -0.65
LINC00540-203ENST00000631321 SECTM1Q8WVN6 248 aa10.98□□□□□ -0.65
LINC00540-203ENST00000631321 BOD1Q96IK1 185 aa10.98□□□□□ -0.65
LINC00540-203ENST00000631321 ABHD14BQ96IU4 210 aa10.98□□□□□ -0.65
LINC00540-203ENST00000631321 AKR1E2Q96JD6 320 aa10.98□□□□□ -0.65
LINC00540-203ENST00000631321 USB1Q9BQ65 265 aaKnown RBP10.98□□□□□ -0.65
LINC00540-203ENST00000631321 CNTRLQ7Z7A1 2325 aa10.98□□□□□ -0.65
LINC00540-203ENST00000631321 NCKAP5O14513 1909 aa10.98□□□□□ -0.65
LINC00540-203ENST00000631321 SHANK1Q9Y566 2161 aa10.98□□□□□ -0.65
LINC00540-203ENST00000631321 C19orf67A6NJJ6 358 aa10.97□□□□□ -0.65
LINC00540-203ENST00000631321 SS18L1O75177 396 aaPredicted RBP10.97□□□□□ -0.65
LINC00540-203ENST00000631321 GLI4P10075 376 aa10.97□□□□□ -0.65
LINC00540-203ENST00000631321 PRKACAP17612 351 aa10.97□□□□□ -0.65
LINC00540-203ENST00000631321 BCL3P20749 454 aa10.97□□□□□ -0.65
LINC00540-203ENST00000631321 GNMTQ14749 295 aa10.97□□□□□ -0.65
LINC00540-203ENST00000631321 C15orf54Q8N8G6 183 aa10.97□□□□□ -0.65
LINC00540-203ENST00000631321 SLC7A10Q9NS82 523 aa10.97□□□□□ -0.65
LINC00540-203ENST00000631321 C19orf12Q9NSK7 152 aa10.97□□□□□ -0.65
LINC00540-203ENST00000631321 LOXL2Q9Y4K0 774 aa10.97□□□□□ -0.65
LINC00540-203ENST00000631321 NME2P1O60361 137 aa10.97□□□□□ -0.65
LINC00540-203ENST00000631321 TUSC2O75896 110 aa10.97□□□□□ -0.65
LINC00540-203ENST00000631321 LHX2P50458 406 aa10.97□□□□□ -0.65
LINC00540-203ENST00000631321 EWSR1Q01844 656 aaKnown RBP eCLIP10.97□□□□□ -0.65
LINC00540-203ENST00000631321 NHLH2Q02577 135 aa10.97□□□□□ -0.65
LINC00540-203ENST00000631321 PRDX4Q13162 271 aa10.97□□□□□ -0.65
LINC00540-203ENST00000631321 GUK1Q16774 197 aa10.97□□□□□ -0.65
LINC00540-203ENST00000631321 CEACAM21Q3KPI0 293 aa10.97□□□□□ -0.65
LINC00540-203ENST00000631321 ZPBPQ9BS86 351 aa10.97□□□□□ -0.65
LINC00540-203ENST00000631321 PAPOLGQ9BWT3 736 aaKnown RBP10.97□□□□□ -0.65
LINC00540-203ENST00000631321 PRDM6Q9NQX0 595 aa10.97□□□□□ -0.65
LINC00540-203ENST00000631321 PCSK5Q92824 1860 aa10.97□□□□□ -0.65
LINC00540-203ENST00000631321 A0A1B0GW64 132 aa10.96□□□□□ -0.65
LINC00540-203ENST00000631321 DUXBA0A1W2PPF3 345 aa10.96□□□□□ -0.65
LINC00540-203ENST00000631321 CLEC18AA5D8T8 446 aa10.96□□□□□ -0.65
LINC00540-203ENST00000631321 NKX2-6A6NCS4 301 aa10.96□□□□□ -0.65
LINC00540-203ENST00000631321 LAMTOR5O43504 91 aa10.96□□□□□ -0.65
LINC00540-203ENST00000631321 PDGFBP01127 241 aaPredicted RBP10.96□□□□□ -0.65
LINC00540-203ENST00000631321 CAMLGP49069 296 aa10.96□□□□□ -0.65
LINC00540-203ENST00000631321 MPV17LQ2QL34 196 aa10.96□□□□□ -0.65
LINC00540-203ENST00000631321 CLEC18CQ8NCF0 446 aa10.96□□□□□ -0.65
LINC00540-203ENST00000631321 SPIN2AQ99865 258 aa10.96□□□□□ -0.65
LINC00540-203ENST00000631321 SPIN2BQ9BPZ2 258 aa10.96□□□□□ -0.65
LINC00540-203ENST00000631321 FAM173AQ9BQD7 235 aa10.96□□□□□ -0.65
LINC00540-203ENST00000631321 SPRY4Q9C004 299 aa10.96□□□□□ -0.65
LINC00540-203ENST00000631321 PARP12Q9H0J9 701 aaKnown RBP10.96□□□□□ -0.65
LINC00540-203ENST00000631321 ZNF703Q9H7S9 590 aaPredicted RBP10.96□□□□□ -0.65
LINC00540-203ENST00000631321 K7N7A8 449 aa10.96□□□□□ -0.66
LINC00540-203ENST00000631321 IGHV3-9P01782 118 aa10.96□□□□□ -0.66
LINC00540-203ENST00000631321 TK1P04183 234 aa10.96□□□□□ -0.66
LINC00540-203ENST00000631321 PPT1P50897 306 aa10.96□□□□□ -0.66
LINC00540-203ENST00000631321 CLDN18P56856 261 aa10.96□□□□□ -0.66
LINC00540-203ENST00000631321 ZNF616Q08AN1 781 aa10.96□□□□□ -0.66
LINC00540-203ENST00000631321 MEX3BQ6ZN04 569 aaKnown RBP10.96□□□□□ -0.66
LINC00540-203ENST00000631321 TBC1D26Q86UD7 250 aa10.96□□□□□ -0.66
LINC00540-203ENST00000631321 ZDHHC23Q8IYP9 409 aa10.96□□□□□ -0.66
LINC00540-203ENST00000631321 SELENOHQ8IZQ5 122 aaKnown RBP10.96□□□□□ -0.66
LINC00540-203ENST00000631321 OR2C3Q8N628 320 aa10.96□□□□□ -0.66
LINC00540-203ENST00000631321 OR2M7Q8NG81 312 aa10.96□□□□□ -0.66
LINC00540-203ENST00000631321 SLAMF9Q96A28 289 aa10.96□□□□□ -0.66
LINC00540-203ENST00000631321 SH3BGRL3Q9H299 93 aa10.96□□□□□ -0.66
LINC00540-203ENST00000631321 TUBA4BQ9H853 241 aa10.96□□□□□ -0.66
LINC00540-203ENST00000631321 CRIM1Q9NZV1 1036 aa10.96□□□□□ -0.66
LINC00540-203ENST00000631321 LRFN1Q9P244 771 aa10.96□□□□□ -0.66
LINC00540-203ENST00000631321 NEURL1O76050 574 aa10.95□□□□□ -0.66
LINC00540-203ENST00000631321 FHITP49789 147 aa10.95□□□□□ -0.66
LINC00540-203ENST00000631321 SHEQ5VZ18 495 aa10.95□□□□□ -0.66
LINC00540-203ENST00000631321 SPINK14Q6IE38 97 aa10.95□□□□□ -0.66
LINC00540-203ENST00000631321 GTF3AQ92664 365 aaKnown RBP10.95□□□□□ -0.66
LINC00540-203ENST00000631321 APOBEC3DQ96AK3 386 aaPredicted RBP10.95□□□□□ -0.66
LINC00540-203ENST00000631321 ESRP2Q9H6T0 727 aaKnown RBP10.95□□□□□ -0.66
LINC00540-203ENST00000631321 COL27A1Q8IZC6 1860 aaPredicted RBP10.95□□□□□ -0.66
LINC00540-203ENST00000631321 PITX3O75364 302 aa10.95□□□□□ -0.66
LINC00540-203ENST00000631321 CTXN2P0C2S0 81 aa10.95□□□□□ -0.66
LINC00540-203ENST00000631321 NKX2-1P43699 371 aaPredicted RBP10.95□□□□□ -0.66
LINC00540-203ENST00000631321 HAAOP46952 286 aa10.95□□□□□ -0.66
LINC00540-203ENST00000631321 NOVA1P51513 510 aaKnown RBP10.95□□□□□ -0.66
LINC00540-203ENST00000631321 GPM6AP51674 278 aa10.95□□□□□ -0.66
LINC00540-203ENST00000631321 HERPUD1Q15011 391 aa10.95□□□□□ -0.66
LINC00540-203ENST00000631321 LFNGQ8NES3 379 aa10.95□□□□□ -0.66
LINC00540-203ENST00000631321 HS3ST6Q96QI5 342 aa10.95□□□□□ -0.66
LINC00540-203ENST00000631321 COA4Q9NYJ1 87 aa10.95□□□□□ -0.66
LINC00540-203ENST00000631321 MTCH1Q9NZJ7 389 aa10.95□□□□□ -0.66
LINC00540-203ENST00000631321 UBE2J1Q9Y385 318 aaPredicted RBP10.95□□□□□ -0.66
LINC00540-203ENST00000631321 KIR2DS1A0A191URI9 304 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 IGSF23A1L1A6 192 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 ZNF98A6NK75 572 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 SLC22A20A6NK97 555 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 SCTP09683 121 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 UCP1P25874 307 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 KIR2DS4P43632 304 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 ZNF266Q14584 549 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 KIR2DS1Q14954 304 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 NMSQ5H8A3 153 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 ZNF818PQ6ZRF7 136 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 MRPL21Q7Z2W9 205 aaKnown RBP10.94□□□□□ -0.66
LINC00540-203ENST00000631321 ZNF695Q8IW36 515 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 MKXQ8IYA7 352 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 BATF2Q8N1L9 274 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 HSD17B11Q8NBQ5 300 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 LILRB1Q8NHL6 650 aaPredicted RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms