RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 H3BUI4 141 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 DENRO43583 198 aaKnown RBP15.86■□□□□ 0.13
UPF1-212ENST00000601689 PSPNO60542 156 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 CDRT1O95170 752 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 CSN2P05814 226 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 CCL3L1P16619 93 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 SERPINA2P20848 420 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 KCNJ3P48549 501 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 P2RX3P56373 397 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 GABARAPL2P60520 117 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 ZNF273Q14593 569 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 TUSC1Q2TAM9 212 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 MIDNQ504T8 468 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 PAN3Q58A45 887 aaKnown RBP15.86■□□□□ 0.13
UPF1-212ENST00000601689 KRBOX4Q5JUW0 171 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 LIPKQ5VXJ0 399 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 GLT8D1Q68CQ7 371 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 AWAT2Q6E213 333 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 ASPHD2Q6ICH7 369 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 C12orf54Q6X4T0 127 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 ASCL4Q6XD76 172 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 RNF144BQ7Z419 303 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.86■□□□□ 0.13
UPF1-212ENST00000601689 PHYHIPQ92561 330 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 ORAI1Q96D31 301 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 MRPS24Q96EL2 167 aaKnown RBP15.86■□□□□ 0.13
UPF1-212ENST00000601689 DUX5Q96PT3 197 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 UQCC2Q9BRT2 126 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 YTHDF1Q9BYJ9 559 aaKnown RBP15.86■□□□□ 0.13
UPF1-212ENST00000601689 PPA2Q9H2U2 334 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 ESM1Q9NQ30 184 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 MRPS28Q9Y2Q9 187 aaKnown RBP15.86■□□□□ 0.13
UPF1-212ENST00000601689 LSM2Q9Y333 95 aaKnown RBP15.86■□□□□ 0.13
UPF1-212ENST00000601689 TRAV8-7A0A075B6U6 113 aa15.85■□□□□ 0.13
UPF1-212ENST00000601689 C17orf98A8MV24 154 aa15.85■□□□□ 0.13
UPF1-212ENST00000601689 HOXA3O43365 443 aaPredicted RBP15.85■□□□□ 0.13
UPF1-212ENST00000601689 ARL6IP5O75915 188 aa15.85■□□□□ 0.13
UPF1-212ENST00000601689 RNASE1P07998 156 aaKnown RBP15.85■□□□□ 0.13
UPF1-212ENST00000601689 OR3A1P47881 315 aa15.85■□□□□ 0.13
UPF1-212ENST00000601689 KLRD1Q13241 179 aa15.85■□□□□ 0.13
UPF1-212ENST00000601689 SLC9A3R2Q15599 337 aa15.85■□□□□ 0.13
UPF1-212ENST00000601689 TBCEQ15813 527 aaPredicted RBP15.85■□□□□ 0.13
UPF1-212ENST00000601689 MPV17LQ2QL34 196 aa15.85■□□□□ 0.13
UPF1-212ENST00000601689 SLC22A6Q4U2R8 563 aa15.85■□□□□ 0.13
UPF1-212ENST00000601689 HSD17B12Q53GQ0 312 aa15.85■□□□□ 0.13
UPF1-212ENST00000601689 OR52W1Q6IF63 320 aa15.85■□□□□ 0.13
UPF1-212ENST00000601689 C16orf87Q6PH81 154 aa15.85■□□□□ 0.13
UPF1-212ENST00000601689 CRIP3Q6Q6R5 217 aa15.85■□□□□ 0.13
UPF1-212ENST00000601689 ZNF367Q7RTV3 350 aa15.85■□□□□ 0.13
UPF1-212ENST00000601689 CEACAM19Q7Z692 300 aa15.85■□□□□ 0.13
UPF1-212ENST00000601689 ZNF565Q8N9K5 539 aa15.85■□□□□ 0.13
UPF1-212ENST00000601689 OR10K1Q8NGX5 313 aa15.85■□□□□ 0.13
UPF1-212ENST00000601689 TNFRSF14Q92956 283 aa15.85■□□□□ 0.13
UPF1-212ENST00000601689 MGLLQ99685 303 aa15.85■□□□□ 0.13
UPF1-212ENST00000601689 OR6C3Q9NZP0 311 aa15.85■□□□□ 0.13
UPF1-212ENST00000601689 GHRLQ9UBU3 117 aa15.85■□□□□ 0.13
UPF1-212ENST00000601689 FBN1P35555 2871 aaKnown RBP15.85■□□□□ 0.13
UPF1-212ENST00000601689 COL6A5A8TX70 2615 aa15.84■□□□□ 0.13
UPF1-212ENST00000601689 A0A0U1RQK1 487 aa15.84■□□□□ 0.13
UPF1-212ENST00000601689 MDFIC2A0A1B0GVS7 189 aa15.84■□□□□ 0.13
UPF1-212ENST00000601689 A0A1W2PRD5 423 aa15.84■□□□□ 0.13
UPF1-212ENST00000601689 A0A1W2PRF3 423 aa15.84■□□□□ 0.13
UPF1-212ENST00000601689 A0A1W2PRM7 423 aa15.84■□□□□ 0.13
UPF1-212ENST00000601689 SLC33A1O00400 549 aaPredicted RBP15.84■□□□□ 0.13
UPF1-212ENST00000601689 OR7C1O76099 320 aaPredicted RBP15.84■□□□□ 0.13
UPF1-212ENST00000601689 CPEP16870 476 aa15.84■□□□□ 0.13
UPF1-212ENST00000601689 FOXL1Q12952 345 aa15.84■□□□□ 0.13
UPF1-212ENST00000601689 TPBGQ13641 420 aa15.84■□□□□ 0.13
UPF1-212ENST00000601689 NHLRC3Q5JS37 347 aa15.84■□□□□ 0.13
UPF1-212ENST00000601689 Q6P435 159 aa15.84■□□□□ 0.13
UPF1-212ENST00000601689 UNQ9370/PRO34162Q6UXP9 181 aa15.84■□□□□ 0.13
UPF1-212ENST00000601689 Q8NFD4 153 aa15.84■□□□□ 0.13
UPF1-212ENST00000601689 SGCDQ92629 289 aa15.84■□□□□ 0.13
UPF1-212ENST00000601689 MUL1Q969V5 352 aa15.84■□□□□ 0.13
UPF1-212ENST00000601689 SPACA1Q9HBV2 294 aa15.84■□□□□ 0.13
UPF1-212ENST00000601689 TAS2R3Q9NYW6 316 aa15.84■□□□□ 0.13
UPF1-212ENST00000601689 KIAA2026Q5HYC2 2103 aa15.83■□□□□ 0.13
UPF1-212ENST00000601689 MELTFP08582 738 aa15.83■□□□□ 0.12
UPF1-212ENST00000601689 SRMP19623 302 aa15.83■□□□□ 0.12
UPF1-212ENST00000601689 SAA4P35542 130 aa15.83■□□□□ 0.12
UPF1-212ENST00000601689 AESQ08117 197 aa15.83■□□□□ 0.12
UPF1-212ENST00000601689 GLIPR1L1Q6UWM5 242 aa15.83■□□□□ 0.12
UPF1-212ENST00000601689 PIP4P2Q8N4L2 257 aa15.83■□□□□ 0.12
UPF1-212ENST00000601689 TPRX1Q8N7U7 411 aa15.83■□□□□ 0.12
UPF1-212ENST00000601689 CST11Q9H112 138 aa15.83■□□□□ 0.12
UPF1-212ENST00000601689 TNFRSF19Q9NS68 423 aa15.83■□□□□ 0.12
UPF1-212ENST00000601689 HSPB6O14558 160 aa15.82■□□□□ 0.12
UPF1-212ENST00000601689 UBBP0CG47 229 aa15.82■□□□□ 0.12
UPF1-212ENST00000601689 IGHV1-8P0DP01 117 aa15.82■□□□□ 0.12
UPF1-212ENST00000601689 COX7A1P24310 79 aa15.82■□□□□ 0.12
UPF1-212ENST00000601689 RBM11P57052 281 aaKnown RBP15.82■□□□□ 0.12
UPF1-212ENST00000601689 ATXN7L3Q14CW9 347 aaPredicted RBP15.82■□□□□ 0.12
UPF1-212ENST00000601689 PIGYQ3MUY2 71 aa15.82■□□□□ 0.12
UPF1-212ENST00000601689 ATAD3CQ5T2N8 411 aa15.82■□□□□ 0.12
UPF1-212ENST00000601689 ZNF782Q6ZMW2 699 aaPredicted RBP15.82■□□□□ 0.12
UPF1-212ENST00000601689 LDLRAD3Q86YD5 345 aa15.82■□□□□ 0.12
UPF1-212ENST00000601689 PNKDQ8N490 385 aa15.82■□□□□ 0.12
UPF1-212ENST00000601689 OR4D6Q8NGJ1 314 aa15.82■□□□□ 0.12
UPF1-212ENST00000601689 NEK7Q8TDX7 302 aa15.82■□□□□ 0.12
UPF1-212ENST00000601689 TMEM203Q969S6 136 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms