RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 GFRA1P56159 465 aa18■□□□□ 0.47
UPF1-207ENST00000599848 OR4Q3Q8NH05 313 aa18■□□□□ 0.47
UPF1-207ENST00000599848 ISG20L2Q9H9L3 353 aaKnown RBP18■□□□□ 0.47
UPF1-207ENST00000599848 ANKRD12Q6UB98 2062 aa18■□□□□ 0.47
UPF1-207ENST00000599848 CTLA4P16410 223 aa18■□□□□ 0.47
UPF1-207ENST00000599848 MDP1Q86V88 176 aa18■□□□□ 0.47
UPF1-207ENST00000599848 CYB5R1Q9UHQ9 305 aa18■□□□□ 0.47
UPF1-207ENST00000599848 GABRB1P18505 474 aa17.99■□□□□ 0.47
UPF1-207ENST00000599848 FGF9P31371 208 aaPredicted RBP17.99■□□□□ 0.47
UPF1-207ENST00000599848 C11orf42Q8N5U0 333 aa17.99■□□□□ 0.47
UPF1-207ENST00000599848 MYH7BA7E2Y1 1941 aa17.99■□□□□ 0.47
UPF1-207ENST00000599848 K7N7A8 449 aa17.99■□□□□ 0.47
UPF1-207ENST00000599848 HTR1DP28221 377 aa17.99■□□□□ 0.47
UPF1-207ENST00000599848 CD80P33681 288 aa17.99■□□□□ 0.47
UPF1-207ENST00000599848 PMELP40967 661 aa17.99■□□□□ 0.47
UPF1-207ENST00000599848 UQCRFS1P47985 274 aa17.99■□□□□ 0.47
UPF1-207ENST00000599848 TEX30Q5JUR7 227 aa17.99■□□□□ 0.47
UPF1-207ENST00000599848 OR8B12Q8NGG6 310 aa17.99■□□□□ 0.47
UPF1-207ENST00000599848 OR4A4PQ8NGN8 299 aa17.99■□□□□ 0.47
UPF1-207ENST00000599848 ANGPTL4Q9BY76 406 aa17.99■□□□□ 0.47
UPF1-207ENST00000599848 IGSF23A1L1A6 192 aa17.99■□□□□ 0.47
UPF1-207ENST00000599848 CTSDP07339 412 aaPredicted RBP17.99■□□□□ 0.47
UPF1-207ENST00000599848 SAP25Q8TEE9 199 aa17.99■□□□□ 0.47
UPF1-207ENST00000599848 GPR27Q9NS67 375 aa17.99■□□□□ 0.47
UPF1-207ENST00000599848 CACNA1SQ13698 1873 aa17.99■□□□□ 0.47
UPF1-207ENST00000599848 PF4V1P10720 104 aa17.99■□□□□ 0.47
UPF1-207ENST00000599848 SLC6A1P30531 599 aa17.99■□□□□ 0.47
UPF1-207ENST00000599848 IGHV1-45A0A0A0MS14 117 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 LEUTXA8MZ59 168 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 ONECUT2O95948 504 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 TMEM251Q8N6I4 163 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 URGCP-MRPS24S4R325 110 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 H3BP45 60 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 NKX2-8O15522 239 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 SELENOPP49908 381 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 GUCA2AQ02747 115 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 HLXQ14774 488 aaPredicted RBP17.98■□□□□ 0.47
UPF1-207ENST00000599848 SYT8Q8NBV8 401 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 ASCL3Q9NQ33 180 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 FAM24AA6NFZ4 105 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 ADRA2AP08913 450 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 HLA-DRB3P79483 266 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 C5orf17Q8NAS9 161 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 OR10A7Q8NGE5 316 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 LILRB4Q8NHJ6 448 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 PRSS3P2Q8NHM4 247 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 P2RX4Q99571 388 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 SYNGR1O43759 233 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 CT62P0C5K7 136 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 OR10Z1Q8NGY1 313 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 ABHD3Q8WU67 409 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 BLNKQ8WV28 456 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 DDB2Q92466 427 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 C14orf79Q96F83 325 aa17.98■□□□□ 0.47
UPF1-207ENST00000599848 CST7O76096 145 aa17.97■□□□□ 0.47
UPF1-207ENST00000599848 RIGQ13278 110 aa17.97■□□□□ 0.47
UPF1-207ENST00000599848 ETFDHQ16134 617 aa17.97■□□□□ 0.47
UPF1-207ENST00000599848 TCTEX1D1Q8N7M0 179 aa17.97■□□□□ 0.47
UPF1-207ENST00000599848 KCNK15Q9H427 330 aa17.97■□□□□ 0.47
UPF1-207ENST00000599848 TMEM272A0A1B0GTI8 110 aa17.97■□□□□ 0.47
UPF1-207ENST00000599848 RAB29O14966 203 aa17.97■□□□□ 0.47
UPF1-207ENST00000599848 SCGB1C2P0DMR2 95 aa17.97■□□□□ 0.47
UPF1-207ENST00000599848 CLDN20P56880 219 aa17.97■□□□□ 0.47
UPF1-207ENST00000599848 BTN1A1Q13410 526 aa17.97■□□□□ 0.47
UPF1-207ENST00000599848 HIKESHIQ53FT3 197 aa17.97■□□□□ 0.47
UPF1-207ENST00000599848 C19orf48Q6RUI8 117 aa17.97■□□□□ 0.47
UPF1-207ENST00000599848 COL22A1Q8NFW1 1626 aaPredicted RBP17.97■□□□□ 0.47
UPF1-207ENST00000599848 VIRMAQ69YN4 1812 aaKnown RBP17.97■□□□□ 0.47
UPF1-207ENST00000599848 B9A039 149 aa17.97■□□□□ 0.47
UPF1-207ENST00000599848 SUMO1P63165 101 aaKnown RBP17.97■□□□□ 0.47
UPF1-207ENST00000599848 CBLN3Q6UW01 205 aa17.97■□□□□ 0.47
UPF1-207ENST00000599848 C16orf47Q6ZP98 133 aaPredicted RBP17.97■□□□□ 0.47
UPF1-207ENST00000599848 GLCCI1Q86VQ1 547 aa17.97■□□□□ 0.47
UPF1-207ENST00000599848 OR52M1Q8NGK5 317 aa17.97■□□□□ 0.47
UPF1-207ENST00000599848 PPP1R1CQ8WVI7 109 aa17.97■□□□□ 0.47
UPF1-207ENST00000599848 MMP7P09237 267 aaPredicted RBP17.97■□□□□ 0.47
UPF1-207ENST00000599848 BAK1Q16611 211 aa17.97■□□□□ 0.47
UPF1-207ENST00000599848 RNF122Q9H9V4 155 aa17.96■□□□□ 0.47
UPF1-207ENST00000599848 PLSCR3Q9NRY6 295 aa17.96■□□□□ 0.47
UPF1-207ENST00000599848 CBR1P16152 277 aa17.96■□□□□ 0.47
UPF1-207ENST00000599848 CSRP1P21291 193 aaKnown RBP17.96■□□□□ 0.47
UPF1-207ENST00000599848 CDKN2AP42771 156 aaKnown RBP17.96■□□□□ 0.47
UPF1-207ENST00000599848 C6orf201Q7Z4U5 140 aa17.96■□□□□ 0.47
UPF1-207ENST00000599848 ZBTB44Q8NCP5 570 aa17.96■□□□□ 0.47
UPF1-207ENST00000599848 ELOVL1Q9BW60 279 aa17.96■□□□□ 0.47
UPF1-207ENST00000599848 SEMG1P04279 462 aa17.96■□□□□ 0.47
UPF1-207ENST00000599848 HLA-GP17693 338 aa17.96■□□□□ 0.47
UPF1-207ENST00000599848 TGIF2Q9GZN2 237 aa17.96■□□□□ 0.47
UPF1-207ENST00000599848 MANBALQ9NQG1 85 aa17.96■□□□□ 0.47
UPF1-207ENST00000599848 LRRTM1Q86UE6 522 aa17.96■□□□□ 0.47
UPF1-207ENST00000599848 SLC26A10Q8NG04 563 aa17.96■□□□□ 0.47
UPF1-207ENST00000599848 SEC11CQ9BY50 192 aa17.96■□□□□ 0.47
UPF1-207ENST00000599848 ZNF107Q9UII5 783 aaPredicted RBP17.96■□□□□ 0.47
UPF1-207ENST00000599848 HYAL3O43820 417 aaPredicted RBP17.96■□□□□ 0.46
UPF1-207ENST00000599848 MBPP02686 304 aaPredicted RBP17.96■□□□□ 0.46
UPF1-207ENST00000599848 IFI6P09912 130 aa17.96■□□□□ 0.46
UPF1-207ENST00000599848 DCTDP32321 178 aa17.96■□□□□ 0.46
UPF1-207ENST00000599848 HMGA2P52926 109 aa17.96■□□□□ 0.46
UPF1-207ENST00000599848 ZP4Q12836 540 aa17.96■□□□□ 0.46
UPF1-207ENST00000599848 UFC1Q9Y3C8 167 aa17.96■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms