RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 BCL2L2Q92843 193 aaPredicted RBP8.54□□□□□ -1.04
LIG3-216ENST00000593099 PRDM14Q9GZV8 571 aa8.54□□□□□ -1.04
LIG3-216ENST00000593099 MMP28Q9H239 520 aa8.54□□□□□ -1.04
LIG3-216ENST00000593099 OR51J1Q9H342 316 aa8.54□□□□□ -1.04
LIG3-216ENST00000593099 KLF4O43474 513 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 FGF7P21781 194 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 APOBEC3AP31941 199 aaPredicted RBP8.53□□□□□ -1.04
LIG3-216ENST00000593099 FCGR2CP31995 323 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 EVX1P49640 407 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 LGI3Q8N145 548 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 RFESDQ8TAC1 157 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 HPSE2Q8WWQ2 592 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 MSI2Q96DH6 328 aaKnown RBP8.53□□□□□ -1.04
LIG3-216ENST00000593099 OR2V2Q96R30 315 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 GAR1Q9NY12 217 aaKnown RBP8.53□□□□□ -1.04
LIG3-216ENST00000593099 RNF24Q9Y225 148 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 ALPK3Q96L96 1907 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 FANCMQ8IYD8 2048 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 SDCBPO00560 298 aaPredicted RBP8.53□□□□□ -1.04
LIG3-216ENST00000593099 SMPD2O60906 423 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 CRYBA1P05813 215 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 GLI4P10075 376 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 IGHV1-2P23083 117 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 CALCRP30988 508 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 CRYBB2P43320 205 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 PDZK1IP1Q13113 114 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 ZNF439Q8NDP4 499 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 OR8G5Q8NG78 346 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 DYNC2LI1Q8TCX1 351 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 ITLN1Q8WWA0 313 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 RBFOX1Q9NWB1 397 aaKnown RBP8.53□□□□□ -1.04
LIG3-216ENST00000593099 NPTNQ9Y639 398 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 LY86O95711 162 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 COX7A1P24310 79 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 PTGDSP41222 190 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 RPS16P62249 146 aaKnown RBP8.53□□□□□ -1.04
LIG3-216ENST00000593099 RPL24P83731 157 aaKnown RBP8.53□□□□□ -1.04
LIG3-216ENST00000593099 ZBTB37Q5TC79 503 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 XAF1Q6GPH4 301 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 DOLPP1Q86YN1 238 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 CDH26Q8IXH8 852 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 KLF14Q8TD94 323 aaPredicted RBP8.53□□□□□ -1.04
LIG3-216ENST00000593099 RPEQ96AT9 228 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 MEGF10Q96KG7 1140 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 CMTM3Q96MX0 182 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 MIOXQ9UGB7 285 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 NKX2-6A6NCS4 301 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 SCO1O75880 301 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 HAND1O96004 215 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 IGHG3P01860 377 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 EIF4EP06730 217 aaKnown RBP8.53□□□□□ -1.04
LIG3-216ENST00000593099 CECR9P0C854 216 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 STAG3L2P0CL84 134 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 SMIM6P0DI80 62 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 TGFBR1P36897 503 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 CEACAM3P40198 252 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 PRRX1P54821 245 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 RANP62826 216 aaKnown RBP8.53□□□□□ -1.04
LIG3-216ENST00000593099 INSL4Q14641 139 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 CYB5R2Q6BCY4 276 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 MOB3BQ86TA1 216 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 OR10AC1Q8NH08 325 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 AMELYQ99218 206 aa8.53□□□□□ -1.04
LIG3-216ENST00000593099 PRSS47A8MTI9 375 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 FABP7O15540 132 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 RPA2P15927 270 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 HIST1H1DP16402 221 aaKnown RBP8.52□□□□□ -1.05
LIG3-216ENST00000593099 HOXA1P49639 335 aaPredicted RBP8.52□□□□□ -1.05
LIG3-216ENST00000593099 TESK1Q15569 626 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 KHDC1LQ5JSQ8 128 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 PRAMEF5Q5TYX0 476 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 OR51S1Q8NGJ8 323 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 ARHGAP5-AS1Q96IT6 56 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 HEXA-AS1Q9H8Q6 139 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 CLDN16Q9Y5I7 305 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 M0QZK8 103 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 M0R2Z0 102 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 GGCTO75223 188 aaKnown RBP8.52□□□□□ -1.05
LIG3-216ENST00000593099 MED6O75586 246 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 CEBPDP49716 269 aaPredicted RBP8.52□□□□□ -1.05
LIG3-216ENST00000593099 GFRA1P56159 465 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 DGCR2P98153 550 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 KCNIP4Q6PIL6 250 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 CCL19Q99731 98 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 AUNIPQ9H7T9 357 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 CA10Q9NS85 328 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 RNF150Q9ULK6 438 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 ZNF716A6NP11 495 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 SPDEFO95238 335 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 BAK1Q16611 211 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 CEACAM21Q3KPI0 293 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 LINC01590Q5TEZ4 76 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 SLC16A13Q7RTY0 426 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 H2BFWTQ7Z2G1 175 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 C14orf79Q96F83 325 aa8.52□□□□□ -1.05
LIG3-216ENST00000593099 CITED2Q99967 270 aaPredicted RBP8.52□□□□□ -1.05
LIG3-216ENST00000593099 AMMECR1Q9Y4X0 333 aaPredicted RBP8.52□□□□□ -1.05
LIG3-216ENST00000593099 TMEM272A0A1B0GTI8 110 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 TMEM200CA6NKL6 621 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 LGALS8O00214 317 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms