RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 PIK3IP1Q96FE7 263 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 HS3ST6Q96QI5 342 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 WDR13Q9H1Z4 485 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 RAB18Q9NP72 206 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 RP1L1Q8IWN7 2480 aaPredicted RBP12.06□□□□□ -0.48
LIG3-205ENST00000585941 RFPL4AA6NLU0 287 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 EEF1E1-BLOC1S5C9J1V9 151 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 RFPL4AL1F8VTS6 287 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 M0R1B8 84 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 SH2D1BO14796 132 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 RHBDL1O75783 438 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 NXPH2O95156 264 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 ZNF728P0DKX0 622 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 GLRA1P23415 457 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 GLRXP35754 106 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 FABP6P51161 128 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 BAMBIQ13145 260 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 ZNF146Q15072 292 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 SGPP2Q8IWX5 399 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 POC1AQ8NBT0 407 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 ZNF488Q96MN9 340 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 VRK1Q99986 396 aaPredicted RBP12.06□□□□□ -0.48
LIG3-205ENST00000585941 DPCDQ9BVM2 203 aaPredicted RBP12.06□□□□□ -0.48
LIG3-205ENST00000585941 TLNRD1Q9H1K6 362 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 IL36RNQ9UBH0 155 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 GLS2Q9UI32 602 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 TINAGQ9UJW2 476 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 ATP23Q9Y6H3 246 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 A0A0G2JNJ9 132 aa12.05□□□□□ -0.48
LIG3-205ENST00000585941 TRDCB7Z8K6 153 aa12.05□□□□□ -0.48
LIG3-205ENST00000585941 L7N2F9 121 aa12.05□□□□□ -0.48
LIG3-205ENST00000585941 CDIPTO14735 213 aa12.05□□□□□ -0.48
LIG3-205ENST00000585941 MLNRO43193 412 aa12.05□□□□□ -0.48
LIG3-205ENST00000585941 IFNA2P01563 188 aa12.05□□□□□ -0.48
LIG3-205ENST00000585941 TK1P04183 234 aa12.05□□□□□ -0.48
LIG3-205ENST00000585941 GRPP07492 148 aa12.05□□□□□ -0.48
LIG3-205ENST00000585941 FAM87AP0C7U9 286 aa12.05□□□□□ -0.48
LIG3-205ENST00000585941 ZNF250P15622 560 aa12.05□□□□□ -0.48
LIG3-205ENST00000585941 BMP5P22003 454 aa12.05□□□□□ -0.48
LIG3-205ENST00000585941 FCGR2CP31995 323 aa12.05□□□□□ -0.48
LIG3-205ENST00000585941 HERV-K104P61576 105 aa12.05□□□□□ -0.48
LIG3-205ENST00000585941 SUPT4H1P63272 117 aaKnown RBP12.05□□□□□ -0.48
LIG3-205ENST00000585941 Q6P435 159 aa12.05□□□□□ -0.48
LIG3-205ENST00000585941 GSG1LQ6UXU4 331 aa12.05□□□□□ -0.48
LIG3-205ENST00000585941 KCTD9Q7L273 389 aa12.05□□□□□ -0.48
LIG3-205ENST00000585941 MOB1BQ7L9L4 216 aa12.05□□□□□ -0.48
LIG3-205ENST00000585941 SLC38A6Q8IZM9 456 aa12.05□□□□□ -0.48
LIG3-205ENST00000585941 MOB3AQ96BX8 217 aa12.05□□□□□ -0.48
LIG3-205ENST00000585941 SYT3Q9BQG1 590 aa12.05□□□□□ -0.48
LIG3-205ENST00000585941 Q9UFV3 132 aa12.05□□□□□ -0.48
LIG3-205ENST00000585941 SLC23A1Q9UHI7 598 aa12.05□□□□□ -0.48
LIG3-205ENST00000585941 RAXQ9Y2V3 346 aa12.05□□□□□ -0.48
LIG3-205ENST00000585941 TRAV24A0A0B4J272 114 aa12.04□□□□□ -0.48
LIG3-205ENST00000585941 M0R233 179 aa12.04□□□□□ -0.48
LIG3-205ENST00000585941 DIRAS3O95661 229 aa12.04□□□□□ -0.48
LIG3-205ENST00000585941 ZNF44P15621 663 aa12.04□□□□□ -0.48
LIG3-205ENST00000585941 RPS2P15880 293 aaKnown RBP12.04□□□□□ -0.48
LIG3-205ENST00000585941 PI3P19957 117 aa12.04□□□□□ -0.48
LIG3-205ENST00000585941 DUSP1P28562 367 aa12.04□□□□□ -0.48
LIG3-205ENST00000585941 ABCA11PQ4W5N1 156 aa12.04□□□□□ -0.48
LIG3-205ENST00000585941 TMEM65Q6PI78 240 aa12.04□□□□□ -0.48
LIG3-205ENST00000585941 ELMOD3Q96FG2 381 aa12.04□□□□□ -0.48
LIG3-205ENST00000585941 HES4Q9HCC6 221 aa12.04□□□□□ -0.48
LIG3-205ENST00000585941 ASF1BQ9NVP2 202 aa12.04□□□□□ -0.48
LIG3-205ENST00000585941 KCNIP3Q9Y2W7 256 aa12.04□□□□□ -0.48
LIG3-205ENST00000585941 PRR14LQ5THK1 2151 aa12.04□□□□□ -0.48
LIG3-205ENST00000585941 FXYD6-FXYD2A0A087WZ82 144 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 CRYM-AS1A6NIL9 109 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 H0YL77 283 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 C16orf97H3BN30 126 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 HS3ST1O14792 307 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 TSC22D2O75157 780 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 KNG1P01042 644 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 IGHV3-13P01766 116 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 SLC25A4P12235 298 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 RPA2P15927 270 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 RBMXP38159 391 aaKnown RBP12.03□□□□□ -0.48
LIG3-205ENST00000585941 NKX6-1P78426 367 aaPredicted RBP12.03□□□□□ -0.48
LIG3-205ENST00000585941 ZNF880Q6PDB4 577 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 FAM185AQ8N0U4 392 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 CCDC71LQ8N9Z2 235 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 NMES1Q9C002 83 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 FXYD6Q9H0Q3 95 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 C1orf123Q9NWV4 160 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 BOD1L1Q8NFC6 3051 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 TEX13DA0A0J9YY54 714 aaPredicted RBP12.03□□□□□ -0.48
LIG3-205ENST00000585941 C5orf51A6NDU8 294 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 KLF3P57682 345 aaPredicted RBP12.03□□□□□ -0.48
LIG3-205ENST00000585941 SELENOVP59797 346 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 SORDQ00796 357 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 FAM27E3Q08E93 113 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 SLC9A3R2Q15599 337 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 PAN3Q58A45 887 aaKnown RBP12.03□□□□□ -0.48
LIG3-205ENST00000585941 TEX261Q6UWH6 196 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 Q6ZPA2 131 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 Q6ZR03 302 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 OR8H1Q8NGG4 311 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 OR4A4PQ8NGN8 299 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 MRPL30Q8TCC3 161 aaKnown RBP12.03□□□□□ -0.48
LIG3-205ENST00000585941 RDH5Q92781 318 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms