RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	FTCDNL1	E5RQL4	147 aa		10.12	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	OR2C1	O95371	312 aa		10.12	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	RCC1	P18754	421 aa	Predicted RBP	10.12	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	OR3A4P	P47883	348 aa		10.12	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	SLC6A8	P48029	635 aa		10.12	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	RPS18	P62269	152 aa	Known RBP	10.12	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	ECH1	Q13011	328 aa		10.12	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	TGIF1	Q15583	401 aa		10.12	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	ATP6V1F	Q16864	119 aa		10.12	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	ZNF260	Q3ZCT1	412 aa		10.12	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	NKAPL	Q5M9Q1	402 aa		10.12	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	NAA40	Q86UY6	237 aa		10.12	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	ZNF441	Q8N8Z8	693 aa		10.12	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	PNLDC1	Q8NA58	520 aa	Known RBP	10.12	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	APCDD1L	Q8NCL9	501 aa		10.12	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	OR5AP2	Q8NGF4	316 aa		10.12	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	PHB2	Q99623	299 aa		10.12	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	STRADB	Q9C0K7	418 aa		10.12	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	CALHM2	Q9HA72	323 aa		10.12	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	PSG11	Q9UQ72	335 aa		10.12	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063		R4GMQ9	66 aa		10.12	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	ZFHX4	Q86UP3	3567 aa		10.12	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	C5orf52	A6NGY3	159 aa		10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	RAMP3	O60896	148 aa		10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	IGFBP3	P17936	291 aa	Predicted RBP	10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	AGTR1	P30556	359 aa		10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	SPEM2	Q0P670	501 aa		10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	DCAF10	Q5QP82	559 aa		10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	H3F3C	Q6NXT2	135 aa		10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	ZSCAN4	Q8NAM6	433 aa	Predicted RBP	10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	OR4K15	Q8NH41	348 aa		10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	TMEM186	Q96B77	213 aa		10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	ELL3	Q9HB65	397 aa	Predicted RBP	10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	MED9	Q9NWA0	146 aa		10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	CPAMD8	Q8IZJ3	1885 aa		10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	TTR	P02766	147 aa		10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	SFTPB	P07988	381 aa		10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	HTR5A	P47898	357 aa		10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	AIMP2	Q13155	320 aa	Known RBP	10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	MICB	Q29980	383 aa		10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	ZNF585A	Q6P3V2	769 aa		10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	UQCC3	Q6UW78	93 aa		10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	GLIPR1L1	Q6UWM5	242 aa		10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	GRINA	Q7Z429	371 aa		10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	OR4K17	Q8NGC6	315 aa		10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	C11orf40	Q8WZ69	217 aa		10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	ZNF775	Q96BV0	537 aa	Predicted RBP	10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	GPER1	Q99527	375 aa		10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	ZNF319	Q9P2F9	582 aa		10.11	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	RP1L1	Q8IWN7	2480 aa	Predicted RBP	10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063		A0A0A6YYD4	124 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	TMEM218	A2RU14	115 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	NKX6-3	A6NJ46	265 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	TP53I11	O14683	189 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	RAD51D	O75771	328 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	NME2	P22392	152 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	RAP1A	P62834	184 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	TLE3	Q04726	772 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	MRPL23	Q16540	153 aa	Known RBP	10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	DRAM2	Q6UX65	266 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	CPEB2	Q7Z5Q1	589 aa	Known RBP	10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	SLC25A42	Q86VD7	318 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	DMBX1	Q8NFW5	382 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	ASB17	Q8WXJ9	295 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	LIN37	Q96GY3	246 aa	Predicted RBP	10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	KLRF1	Q9NZS2	232 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	FIGNL2	A6NMB9	653 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063		G3V3Y1	287 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	RER1	O15258	196 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	CYB5B	O43169	146 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	SRSF10	O75494	262 aa	Known RBP	10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	CD8A	P01732	235 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	PVALB	P20472	110 aa	Predicted RBP	10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	SFTPD	P35247	375 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	ARFRP1	Q13795	201 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	PLPP5	Q8NEB5	264 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	OR10S1	Q8NGN2	331 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	OR4A4P	Q8NGN8	299 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	ASB10	Q8WXI3	467 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	SLAMF6	Q96DU3	332 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	DDA1	Q9BW61	102 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	DEFB126	Q9BYW3	111 aa		10.1	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	ZNHIT1	O43257	154 aa		10.09	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	OR2F2	O95006	317 aa		10.09	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	ZNF93	P35789	620 aa	Predicted RBP	10.09	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	OR2F1	Q13607	317 aa		10.09	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	DHRS13	Q6UX07	377 aa		10.09	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	ZNF562	Q6V9R5	426 aa		10.09	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	OR10G3	Q8NGC4	313 aa		10.09	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	OR10C1	Q96KK4	312 aa		10.09	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	PCGF1	Q9BSM1	259 aa		10.09	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	RNF126	Q9BV68	326 aa		10.09	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	PBOV1	Q9GZY1	135 aa		10.09	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	TMPRSS5	Q9H3S3	457 aa		10.09	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	ZNF292	O60281	2723 aa		10.09	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063		C9J4A7	227 aa		10.09	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	CD74	P04233	296 aa		10.09	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	OTX2	P32243	289 aa		10.09	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	ASCL1	P50553	236 aa		10.09	□□□□□ -0.79
CDK5RAP3-231	ENST00000584063	MFAP4	P55083	255 aa		10.09	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms