RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 THEM6Q8WUY1 208 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 UBE2FQ969M7 185 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 ZNF488Q96MN9 340 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 SSX3Q99909 188 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 MND1Q9BWT6 205 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 GABARAPL1Q9H0R8 117 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 METTL8Q9H825 291 aaKnown RBP5.45□□□□□ -1.54
VPS53-213ENST00000572334 ABCB9Q9NP78 766 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 MCUBQ9NWR8 336 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 COPZ2Q9P299 210 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 GMPPBQ9Y5P6 360 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 COL7A1Q02388 2944 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 TRBV23-1A0A0A0MS06 115 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 A0A1B0GTI1 187 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 IRGMA1A4Y4 181 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 NKX6-3A6NJ46 265 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 ACOD1A6NK06 481 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 RFPL4AA6NLU0 287 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 ADARB2-AS1A8MUL3 147 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 PRR23D1E9PI22 279 aaPredicted RBP5.44□□□□□ -1.54
VPS53-213ENST00000572334 RFPL4AL1F8VTS6 287 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 H3BN98 237 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 H7C2Y5 167 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 WRBO00258 174 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 PRODHO43272 600 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 ANGPTL7O43827 346 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 TTRP02766 147 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 PRB2P02812 416 aaPredicted RBP5.44□□□□□ -1.54
VPS53-213ENST00000572334 IFNA4P05014 189 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 CSF1P09603 554 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 PGA5P0DJD9 388 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 PRR23D2P0DMB1 279 aaPredicted RBP5.44□□□□□ -1.54
VPS53-213ENST00000572334 RRASP10301 218 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 OSMP13725 252 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 CCL3L1P16619 93 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 FAHP16930 419 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 POU1F1P28069 291 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 NUP62P37198 522 aaPredicted RBP5.44□□□□□ -1.54
VPS53-213ENST00000572334 GABRA2P47869 451 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 GNG3P63215 75 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 EFNB1P98172 346 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 ROM1Q03395 351 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 MFGE8Q08431 387 aaPredicted RBP5.44□□□□□ -1.54
VPS53-213ENST00000572334 ZNF273Q14593 569 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 C2orf68Q2NKX9 166 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 LRRC75BQ2VPJ9 315 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 SLC35D3Q5M8T2 416 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 DDI2Q5TDH0 399 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 TMEM42Q69YG0 159 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 TMEM200BQ69YZ2 307 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 MZT2AQ6P582 158 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 HAGHLQ6PII5 290 aaPredicted RBP5.44□□□□□ -1.54
VPS53-213ENST00000572334 TEX261Q6UWH6 196 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 LHFPL4Q7Z7J7 247 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 OR8H3Q8N146 312 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 FTMTQ8N4E7 242 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 C11orf44Q8N8P7 122 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.44□□□□□ -1.54
VPS53-213ENST00000572334 POC1AQ8NBT0 407 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 TMEM185AQ8NFB2 350 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 OR5A2Q8NGI9 324 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 OR51E1Q8TCB6 317 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 SGCDQ92629 289 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 OR8B4Q96RC9 309 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 MNTQ99583 582 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 TEAD3Q99594 435 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 PBOV1Q9GZY1 135 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 ZNF702PQ9H963 129 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 SLC25A19Q9HC21 320 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 HES4Q9HCC6 221 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 GPR84Q9NQS5 396 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 SERTAD4Q9NUC0 356 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 PPP1R14DQ9NXH3 145 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 SF3B6Q9Y3B4 125 aaKnown RBP5.44□□□□□ -1.54
VPS53-213ENST00000572334 HSPB11Q9Y547 144 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 U3KQ87 197 aa5.44□□□□□ -1.54
VPS53-213ENST00000572334 KMT2CQ8NEZ4 4911 aaKnown RBP5.43□□□□□ -1.54
VPS53-213ENST00000572334 FAM240BA0A1B0GVZ2 78 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 TMEM269A0A1B0GVZ9 245 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 A0A1W2PQ09 198 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 PQLC2LA1A4F0 135 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 BTBD17A6NE02 478 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 OR5B21A6NL26 309 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 ODF3BA8MYP8 253 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 F8VVB4 439 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 F8VWA3 439 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 LCE2BO14633 110 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 MAGEB4O15481 346 aaPredicted RBP5.43□□□□□ -1.54
VPS53-213ENST00000572334 LALBAP00709 142 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 OPN1MWP04001 364 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 S100A8P05109 93 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 MRPL3P09001 348 aaKnown RBP5.43□□□□□ -1.54
VPS53-213ENST00000572334 OPN1MW2P0DN77 364 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 OPN1MW3P0DN78 364 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 ANXA3P12429 323 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 PAICSP22234 425 aaKnown RBP5.43□□□□□ -1.54
VPS53-213ENST00000572334 MPZP25189 248 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 PSMA1P25786 263 aaKnown RBP5.43□□□□□ -1.54
VPS53-213ENST00000572334 GABRA5P31644 462 aa5.43□□□□□ -1.54
VPS53-213ENST00000572334 SDC2P34741 201 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms