RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 ERP29P30040 261 aaKnown RBP17.03■□□□□ 0.32
VPS53-210ENST00000571456 SCAND1P57086 179 aa17.03■□□□□ 0.32
VPS53-210ENST00000571456 IL17RELQ6ZVW7 336 aa17.03■□□□□ 0.32
VPS53-210ENST00000571456 BTN2A1Q7KYR7 527 aa17.03■□□□□ 0.32
VPS53-210ENST00000571456 ANKRD13BQ86YJ7 626 aa17.03■□□□□ 0.32
VPS53-210ENST00000571456 OR10K1Q8NGX5 313 aa17.03■□□□□ 0.32
VPS53-210ENST00000571456 GFI1Q99684 422 aa17.03■□□□□ 0.32
VPS53-210ENST00000571456 NUDT16L1Q9BRJ7 211 aaKnown RBP17.03■□□□□ 0.32
VPS53-210ENST00000571456 LPAR2Q9HBW0 351 aa17.03■□□□□ 0.32
VPS53-210ENST00000571456 RPUSD1Q9UJJ7 312 aaKnown RBP17.03■□□□□ 0.32
VPS53-210ENST00000571456 ARHGAP32A7KAX9 2087 aa17.03■□□□□ 0.32
VPS53-210ENST00000571456 CRTAPO75718 401 aaPredicted RBP17.02■□□□□ 0.32
VPS53-210ENST00000571456 GLAP06280 429 aa17.02■□□□□ 0.32
VPS53-210ENST00000571456 PAX5Q02548 391 aa17.02■□□□□ 0.32
VPS53-210ENST00000571456 FAM120AOSQ5T036 256 aa17.02■□□□□ 0.32
VPS53-210ENST00000571456 Q6P435 159 aa17.02■□□□□ 0.32
VPS53-210ENST00000571456 GDPD3Q7L5L3 318 aa17.02■□□□□ 0.32
VPS53-210ENST00000571456 KIR3DL3Q8N743 410 aa17.02■□□□□ 0.32
VPS53-210ENST00000571456 LY6G5BQ8NDX9 201 aa17.02■□□□□ 0.32
VPS53-210ENST00000571456 SLC25A28Q96A46 364 aa17.02■□□□□ 0.32
VPS53-210ENST00000571456 BCL7BQ9BQE9 202 aa17.02■□□□□ 0.32
VPS53-210ENST00000571456 URM1Q9BTM9 101 aaKnown RBP17.02■□□□□ 0.32
VPS53-210ENST00000571456 CENPOQ9BU64 300 aa17.02■□□□□ 0.32
VPS53-210ENST00000571456 SHISA3A0PJX4 238 aa17.01■□□□□ 0.31
VPS53-210ENST00000571456 GABRR1P24046 479 aa17.01■□□□□ 0.31
VPS53-210ENST00000571456 SDC2P34741 201 aa17.01■□□□□ 0.31
VPS53-210ENST00000571456 MEF2CQ06413 473 aaPredicted RBP17.01■□□□□ 0.31
VPS53-210ENST00000571456 PAX8Q06710 450 aa17.01■□□□□ 0.31
VPS53-210ENST00000571456 CMTM4Q8IZR5 234 aa17.01■□□□□ 0.31
VPS53-210ENST00000571456 SGMS2Q8NHU3 365 aa17.01■□□□□ 0.31
VPS53-210ENST00000571456 PTX4Q96A99 478 aa17.01■□□□□ 0.31
VPS53-210ENST00000571456 FAM3DQ96BQ1 224 aa17.01■□□□□ 0.31
VPS53-210ENST00000571456 TMEM59Q9BXS4 323 aa17.01■□□□□ 0.31
VPS53-210ENST00000571456 NCOR1P1Q9H4R4 102 aa17.01■□□□□ 0.31
VPS53-210ENST00000571456 IL36RNQ9UBH0 155 aa17.01■□□□□ 0.31
VPS53-210ENST00000571456 DSCAML1Q8TD84 2053 aa17.01■□□□□ 0.31
VPS53-210ENST00000571456 NOTCH1P46531 2555 aa17■□□□□ 0.31
VPS53-210ENST00000571456 A0A0G2JK05 382 aa17■□□□□ 0.31
VPS53-210ENST00000571456 A0A1B0GW55 424 aa17■□□□□ 0.31
VPS53-210ENST00000571456 TMEM14DPA8MWL7 114 aa17■□□□□ 0.31
VPS53-210ENST00000571456 C22orf46C9J442 243 aa17■□□□□ 0.31
VPS53-210ENST00000571456 SLC33A1O00400 549 aaPredicted RBP17■□□□□ 0.31
VPS53-210ENST00000571456 OR7C1O76099 320 aaPredicted RBP17■□□□□ 0.31
VPS53-210ENST00000571456 IL1AP01583 271 aa17■□□□□ 0.31
VPS53-210ENST00000571456 DUX4L2P0CJ85 424 aa17■□□□□ 0.31
VPS53-210ENST00000571456 DUX4L3P0CJ86 424 aa17■□□□□ 0.31
VPS53-210ENST00000571456 DUX4L4P0CJ87 422 aa17■□□□□ 0.31
VPS53-210ENST00000571456 DUX4L5P0CJ88 424 aa17■□□□□ 0.31
VPS53-210ENST00000571456 DUX4L6P0CJ89 424 aa17■□□□□ 0.31
VPS53-210ENST00000571456 DUX4L7P0CJ90 424 aa17■□□□□ 0.31
VPS53-210ENST00000571456 VSIG8P0DPA2 414 aa17■□□□□ 0.31
VPS53-210ENST00000571456 DUSP1P28562 367 aa17■□□□□ 0.31
VPS53-210ENST00000571456 CEBPDP49716 269 aaPredicted RBP17■□□□□ 0.31
VPS53-210ENST00000571456 SNU13P55769 128 aaKnown RBP17■□□□□ 0.31
VPS53-210ENST00000571456 RBM39Q14498 530 aaKnown RBP17■□□□□ 0.31
VPS53-210ENST00000571456 GRK1Q15835 563 aa17■□□□□ 0.31
VPS53-210ENST00000571456 PIGYQ3MUY2 71 aa17■□□□□ 0.31
VPS53-210ENST00000571456 DUX4L9Q6RFH8 374 aaPredicted RBP17■□□□□ 0.31
VPS53-210ENST00000571456 C17orf107Q6ZR85 190 aa17■□□□□ 0.31
VPS53-210ENST00000571456 C1orf122Q6ZSJ8 110 aa17■□□□□ 0.31
VPS53-210ENST00000571456 H1FXQ92522 213 aaKnown RBP17■□□□□ 0.31
VPS53-210ENST00000571456 Q96M66 194 aa17■□□□□ 0.31
VPS53-210ENST00000571456 NKX3-1Q99801 234 aaPredicted RBP17■□□□□ 0.31
VPS53-210ENST00000571456 TM2D1Q9BX74 207 aa17■□□□□ 0.31
VPS53-210ENST00000571456 SELENOIQ9C0D9 397 aa17■□□□□ 0.31
VPS53-210ENST00000571456 C7orf69Q9H7B7 122 aa17■□□□□ 0.31
VPS53-210ENST00000571456 DUX4Q9UBX2 424 aa17■□□□□ 0.31
VPS53-210ENST00000571456 KPTNQ9Y664 436 aa17■□□□□ 0.31
VPS53-210ENST00000571456 TMEM82A0PJX8 343 aa16.99■□□□□ 0.31
VPS53-210ENST00000571456 SIRPB1O00241 398 aa16.99■□□□□ 0.31
VPS53-210ENST00000571456 FCN3O75636 299 aa16.99■□□□□ 0.31
VPS53-210ENST00000571456 GABARAPO95166 117 aa16.99■□□□□ 0.31
VPS53-210ENST00000571456 SELLP14151 372 aa16.99■□□□□ 0.31
VPS53-210ENST00000571456 RPL31P62899 125 aaKnown RBP16.99■□□□□ 0.31
VPS53-210ENST00000571456 RPS27AP62979 156 aaKnown RBP16.99■□□□□ 0.31
VPS53-210ENST00000571456 SCGB2A2Q13296 93 aa16.99■□□□□ 0.31
VPS53-210ENST00000571456 BLMHQ13867 455 aa16.99■□□□□ 0.31
VPS53-210ENST00000571456 FAHD2BQ6P2I3 314 aaPredicted RBP16.99■□□□□ 0.31
VPS53-210ENST00000571456 FAHD2AQ96GK7 314 aa16.99■□□□□ 0.31
VPS53-210ENST00000571456 BARHL1Q9BZE3 327 aa16.99■□□□□ 0.31
VPS53-210ENST00000571456 MMP26Q9NRE1 261 aa16.99■□□□□ 0.31
VPS53-210ENST00000571456 RCC2Q9P258 522 aaKnown RBP16.99■□□□□ 0.31
VPS53-210ENST00000571456 METRNQ9UJH8 293 aa16.99■□□□□ 0.31
VPS53-210ENST00000571456 hCG_1809904A0A1W2PP81 198 aa16.98■□□□□ 0.31
VPS53-210ENST00000571456 A0A1W2PPE2 198 aa16.98■□□□□ 0.31
VPS53-210ENST00000571456 A0A1W2PR64 198 aa16.98■□□□□ 0.31
VPS53-210ENST00000571456 A0A1W2PRV1 198 aa16.98■□□□□ 0.31
VPS53-210ENST00000571456 hADV38S2A0JD32 116 aa16.98■□□□□ 0.31
VPS53-210ENST00000571456 M0R1W7 72 aa16.98■□□□□ 0.31
VPS53-210ENST00000571456 GEMIN2O14893 280 aaKnown RBP16.98■□□□□ 0.31
VPS53-210ENST00000571456 TCF21O43680 179 aa16.98■□□□□ 0.31
VPS53-210ENST00000571456 PSPNO60542 156 aa16.98■□□□□ 0.31
VPS53-210ENST00000571456 CA11O75493 328 aa16.98■□□□□ 0.31
VPS53-210ENST00000571456 MPIG6BO95866 241 aa16.98■□□□□ 0.31
VPS53-210ENST00000571456 CALCBP10092 127 aa16.98■□□□□ 0.31
VPS53-210ENST00000571456 RAB6AP20340 208 aa16.98■□□□□ 0.31
VPS53-210ENST00000571456 OR3A1P47881 315 aa16.98■□□□□ 0.31
VPS53-210ENST00000571456 QRFPP83859 136 aa16.98■□□□□ 0.31
VPS53-210ENST00000571456 SCN1BQ07699 218 aa16.98■□□□□ 0.31
VPS53-210ENST00000571456 TAF9Q16594 264 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms