RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 TPRX1Q8N7U7 411 aa8.02□□□□□ -1.13
CLK3-220ENST00000567992 NKAIN3Q8N8D7 197 aa8.02□□□□□ -1.13
CLK3-220ENST00000567992 CHST4Q8NCG5 386 aa8.02□□□□□ -1.13
CLK3-220ENST00000567992 ZNF418Q8TF45 676 aaPredicted RBP8.02□□□□□ -1.13
CLK3-220ENST00000567992 ZFAND2BQ8WV99 257 aa8.02□□□□□ -1.13
CLK3-220ENST00000567992 PHYHIPQ92561 330 aa8.02□□□□□ -1.13
CLK3-220ENST00000567992 COQ2Q96H96 371 aa8.02□□□□□ -1.13
CLK3-220ENST00000567992 TSC22D3Q99576 134 aa8.02□□□□□ -1.13
CLK3-220ENST00000567992 GFI1Q99684 422 aa8.02□□□□□ -1.13
CLK3-220ENST00000567992 SUCNR1Q9BXA5 334 aa8.02□□□□□ -1.13
CLK3-220ENST00000567992 YTHDF1Q9BYJ9 559 aaKnown RBP8.02□□□□□ -1.13
CLK3-220ENST00000567992 MRPS26Q9BYN8 205 aaKnown RBP8.02□□□□□ -1.13
CLK3-220ENST00000567992 MS4A7Q9GZW8 240 aaPredicted RBP8.02□□□□□ -1.13
CLK3-220ENST00000567992 PRDM13Q9H4Q3 707 aa8.02□□□□□ -1.13
CLK3-220ENST00000567992 NDUFB11Q9NX14 153 aa8.02□□□□□ -1.13
CLK3-220ENST00000567992 A0A0U1RQK1 487 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 DNAJC9-AS1A6NH13 148 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 C17orf98A8MV24 154 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 SH2D1BO14796 132 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 MGST3O14880 152 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 HTR3BO95264 441 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 ZNF44P15621 663 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 SERPINA2P20848 420 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 PSMA1P25786 263 aaKnown RBP8.01□□□□□ -1.13
CLK3-220ENST00000567992 ERP29P30040 261 aaKnown RBP8.01□□□□□ -1.13
CLK3-220ENST00000567992 GABRA5P31644 462 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 RPL5P46777 297 aaKnown RBP8.01□□□□□ -1.13
CLK3-220ENST00000567992 EDDM3BP56851 147 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 RBM11P57052 281 aaKnown RBP8.01□□□□□ -1.13
CLK3-220ENST00000567992 BPIFB3P59826 476 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 TRAM1Q15629 374 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 DEFB112Q30KQ8 113 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 KCTD21Q4G0X4 260 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 HSD17B12Q53GQ0 312 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 ZNF773Q6PK81 442 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 GLIPR1L1Q6UWM5 242 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 GDPD3Q7L5L3 318 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 PNKDQ8N490 385 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 OR5D13Q8NGL4 314 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 TBC1D15Q8TC07 691 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 AJUBAQ96IF1 538 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 CYYR1Q96J86 154 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 UQCC2Q9BRT2 126 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 METTL9Q9H1A3 318 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 PPA2Q9H2U2 334 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 IFT22Q9H7X7 185 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 METTL8Q9H825 291 aaKnown RBP8.01□□□□□ -1.13
CLK3-220ENST00000567992 GLS2Q9UI32 602 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 ING4Q9UNL4 249 aa8.01□□□□□ -1.13
CLK3-220ENST00000567992 MRPS28Q9Y2Q9 187 aaKnown RBP8.01□□□□□ -1.13
CLK3-220ENST00000567992 SHISA3A0PJX4 238 aa8□□□□□ -1.13
CLK3-220ENST00000567992 MEGF11A6BM72 1044 aa8□□□□□ -1.13
CLK3-220ENST00000567992 RNF212BA8MTL3 300 aa8□□□□□ -1.13
CLK3-220ENST00000567992 GEMIN2O14893 280 aaKnown RBP8□□□□□ -1.13
CLK3-220ENST00000567992 DEGS1O15121 323 aa8□□□□□ -1.13
CLK3-220ENST00000567992 ZNF780AO75290 641 aaPredicted RBP8□□□□□ -1.13
CLK3-220ENST00000567992 RBP4P02753 201 aa8□□□□□ -1.13
CLK3-220ENST00000567992 ZNF728P0DKX0 622 aa8□□□□□ -1.13
CLK3-220ENST00000567992 SRMP19623 302 aa8□□□□□ -1.13
CLK3-220ENST00000567992 GLIPR1P48060 266 aa8□□□□□ -1.13
CLK3-220ENST00000567992 UBE2E1P51965 193 aa8□□□□□ -1.13
CLK3-220ENST00000567992 UBA52P62987 128 aaKnown RBP8□□□□□ -1.13
CLK3-220ENST00000567992 PAX5Q02548 391 aa8□□□□□ -1.13
CLK3-220ENST00000567992 MEF2CQ06413 473 aaPredicted RBP8□□□□□ -1.13
CLK3-220ENST00000567992 SCN1BQ07699 218 aa8□□□□□ -1.13
CLK3-220ENST00000567992 ATXN7L3Q14CW9 347 aaPredicted RBP8□□□□□ -1.13
CLK3-220ENST00000567992 SLC22A6Q4U2R8 563 aa8□□□□□ -1.13
CLK3-220ENST00000567992 C1orf100Q5SVJ3 147 aa8□□□□□ -1.13
CLK3-220ENST00000567992 NCR3LG1Q68D85 454 aa8□□□□□ -1.13
CLK3-220ENST00000567992 AWAT2Q6E213 333 aa8□□□□□ -1.13
CLK3-220ENST00000567992 CD200R1LQ6Q8B3 271 aa8□□□□□ -1.13
CLK3-220ENST00000567992 OSR2Q8N2R0 312 aa8□□□□□ -1.13
CLK3-220ENST00000567992 SVOPQ8N4V2 548 aa8□□□□□ -1.13
CLK3-220ENST00000567992 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8□□□□□ -1.13
CLK3-220ENST00000567992 TMEM104Q8NE00 496 aa8□□□□□ -1.13
CLK3-220ENST00000567992 PPP1R35Q8TAP8 253 aa8□□□□□ -1.13
CLK3-220ENST00000567992 PLPPR1Q8TBJ4 325 aa8□□□□□ -1.13
CLK3-220ENST00000567992 C19orf24Q9BVV8 132 aa8□□□□□ -1.13
CLK3-220ENST00000567992 RCC2Q9P258 522 aaKnown RBP8□□□□□ -1.13
CLK3-220ENST00000567992 ST3GAL6Q9Y274 331 aa8□□□□□ -1.13
CLK3-220ENST00000567992 LINC00312Q9Y6C7 94 aa8□□□□□ -1.13
CLK3-220ENST00000567992 A0A1W2PPH5 198 aa7.99□□□□□ -1.13
CLK3-220ENST00000567992 hADV38S2A0JD32 116 aa7.99□□□□□ -1.13
CLK3-220ENST00000567992 ODAMA1E959 279 aa7.99□□□□□ -1.13
CLK3-220ENST00000567992 CLDN34H7C241 214 aa7.99□□□□□ -1.13
CLK3-220ENST00000567992 HSPB6O14558 160 aa7.99□□□□□ -1.13
CLK3-220ENST00000567992 NPFFO15130 113 aa7.99□□□□□ -1.13
CLK3-220ENST00000567992 SLC22A1O15245 554 aa7.99□□□□□ -1.13
CLK3-220ENST00000567992 MMP23AO75900 390 aa7.99□□□□□ -1.13
CLK3-220ENST00000567992 MELTFP08582 738 aa7.99□□□□□ -1.13
CLK3-220ENST00000567992 GTF2F2P13984 249 aa7.99□□□□□ -1.13
CLK3-220ENST00000567992 GUCA2AQ02747 115 aa7.99□□□□□ -1.13
CLK3-220ENST00000567992 AESQ08117 197 aa7.99□□□□□ -1.13
CLK3-220ENST00000567992 SLC9A3R2Q15599 337 aa7.99□□□□□ -1.13
CLK3-220ENST00000567992 MPV17LQ2QL34 196 aa7.99□□□□□ -1.13
CLK3-220ENST00000567992 CNPY1Q3B7I2 92 aa7.99□□□□□ -1.13
CLK3-220ENST00000567992 PAN3Q58A45 887 aaKnown RBP7.99□□□□□ -1.13
CLK3-220ENST00000567992 RSBN1Q5VWQ0 802 aaPredicted RBP7.99□□□□□ -1.13
CLK3-220ENST00000567992 Q6YL49 198 aa7.99□□□□□ -1.13
CLK3-220ENST00000567992 ZNF782Q6ZMW2 699 aaPredicted RBP7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms