RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 F8VWA3 439 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 H7C423 109 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 M0R296 226 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 MANBAO00462 879 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 GNGT2O14610 69 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 ARPC1BO15143 372 aaKnown RBP2.84□□□□□ -1.95
VPS35-203ENST00000562420 ST8SIA3O43173 380 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 BCL2L11O43521 198 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 XRCC2O43543 280 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 PRKAB2O43741 272 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 LANCL1O43813 399 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 TIMM8AO60220 97 aaPredicted RBP2.84□□□□□ -1.95
VPS35-203ENST00000562420 LRP3O75074 770 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 SAP30O75446 220 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 CXCL14O95715 111 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 RAB36O95755 333 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 CST1P01037 141 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 PMP2P02689 132 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 CD74P04233 296 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 ALDOBP05062 364 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 ISG15P05161 165 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 CD14P08571 375 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 ZSCAN5DPP0CG00 497 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 PPIAL4GP0DN37 164 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 ESDP10768 282 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 CD37P11049 281 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 ZNF35P13682 527 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 GOT1P17174 413 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 ATF1P18846 271 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 PSMB1P20618 241 aaKnown RBP2.84□□□□□ -1.95
VPS35-203ENST00000562420 KITLGP21583 273 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 HIST1H1TP22492 207 aaPredicted RBP2.84□□□□□ -1.95
VPS35-203ENST00000562420 PRKACGP22612 351 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 TUBG1P23258 451 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 NFYBP25208 207 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 AZGP1P25311 298 aaKnown RBP2.84□□□□□ -1.95
VPS35-203ENST00000562420 OR1D2P34982 312 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 FAUP35544 74 aaKnown RBP2.84□□□□□ -1.95
VPS35-203ENST00000562420 ACVR1BP36896 505 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 OPRD1P41143 372 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 GABRA2P47869 451 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 OR3A2P47893 321 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 UQCRFS1P47985 274 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 KLK7P49862 253 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 VAMP7P51809 220 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 POLR2HP52434 150 aaKnown RBP2.84□□□□□ -1.95
VPS35-203ENST00000562420 OR12D2P58182 307 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 LSM3P62310 102 aaKnown RBP2.84□□□□□ -1.95
VPS35-203ENST00000562420 PPIAP62937 165 aaKnown RBP2.84□□□□□ -1.95
VPS35-203ENST00000562420 SSBP1Q04837 148 aaKnown RBP2.84□□□□□ -1.95
VPS35-203ENST00000562420 MXD1Q05195 221 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 HTR4Q13639 388 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 LY6DQ14210 128 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 PSG5Q15238 335 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 GABRA6Q16445 453 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 TMEM183BQ1AE95 376 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 SNAI3Q3KNW1 292 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 ARHGAP11BQ3KRB8 267 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 TTLL9Q3SXZ7 439 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 KHDC3LQ587J8 217 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 TMEM128Q5BJH2 165 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 SLC25A53Q5H9E4 307 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 SLC25A30Q5SVS4 291 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 HENMT1Q5T8I9 393 aaKnown RBP2.84□□□□□ -1.95
VPS35-203ENST00000562420 FAM78BQ5VT40 261 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 ZNF57Q68EA5 555 aaPredicted RBP2.84□□□□□ -1.95
VPS35-203ENST00000562420 STUMQ69YW2 141 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 OR4A47Q6IF82 309 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 LAIR2Q6ISS4 152 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 PRSS54Q6PEW0 395 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 CD200R1LQ6Q8B3 271 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 TMEM220Q6QAJ8 160 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 ALKAL2Q6UX46 152 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 TMPPEQ6ZT21 453 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 IL17RELQ6ZVW7 336 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 GTF2H5Q6ZYL4 71 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 SMIM5Q71RC9 77 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 FA2HQ7L5A8 372 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 TGIF2LYQ8IUE0 185 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 FBXO16Q8IX29 292 aaPredicted RBP2.84□□□□□ -1.95
VPS35-203ENST00000562420 ZNF440Q8IYI8 595 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 DND1Q8IYX4 353 aaKnown RBP2.84□□□□□ -1.95
VPS35-203ENST00000562420 TOMM5Q8N4H5 51 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 TCTEX1D1Q8N7M0 179 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 CLEC1AQ8NC01 280 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 PLPP5Q8NEB5 264 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 OR10G3Q8NGC4 313 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 OR4K1Q8NGD4 311 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 OR4A4PQ8NGN8 299 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 OR1S2Q8NGQ3 325 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 OR10Q1Q8NGQ4 319 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 OR10X1Q8NGY0 326 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 OR6K2Q8NGY2 324 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 LYPD6BQ8NI32 183 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 ZNF564Q8TBZ8 553 aaPredicted RBP2.84□□□□□ -1.95
VPS35-203ENST00000562420 MARCH1Q8TCQ1 289 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 VN1R17PQ8TDU5 208 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 PSMF1Q92530 271 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 NAT6Q93015 286 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 C8orf44Q96CB5 159 aa2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms