RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 FBXL3Q9UKT7 428 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 SLC22A14Q9Y267 594 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 TBL2Q9Y4P3 447 aaKnown RBP0.9□□□□□ -2.27
USP3-209ENST00000558925 USH1CQ9Y6N9 552 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 ZNF780BQ9Y6R6 833 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 IGLV2-18A0A075B6J9 118 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 TRAV8-3A0A0A6YYJ7 113 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 A0A1W2PQ67 120 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 FABP12A6NFH5 140 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 C9JQL5 133 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 TOR1AO14656 332 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 FABP7O15540 132 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 CALUO43852 315 aaPredicted RBP0.89□□□□□ -2.27
USP3-209ENST00000558925 COX7A2P2O60397 106 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 PDCD6O75340 191 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 RBBP9O75884 186 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 SNAP29O95721 258 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 EPPINO95925 133 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 CA2P00918 260 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 IGHV1-46P01743 117 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 CECR9P0C854 216 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 LIMS3P0CW19 117 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 LIMS4P0CW20 117 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 CGB3P0DN86 165 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 CGB7P0DN87 165 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 GRPRP30550 384 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 MPIP34949 423 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 HTR2BP41595 481 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 IDH2P48735 452 aaKnown RBP0.89□□□□□ -2.27
USP3-209ENST00000558925 UBE2G2P60604 165 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 BNIP2Q12982 314 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 SYCP1Q15431 976 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 ZNHIT3Q15649 155 aaPredicted RBP0.89□□□□□ -2.27
USP3-209ENST00000558925 UBE2NLQ5JXB2 153 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 CLEC12AQ5QGZ9 265 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 TIMM23BQ5SRD1 257 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 NXNL2Q5VZ03 156 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 GLYATQ6IB77 296 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 CLEC18BQ6UXF7 455 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 DGAT2L6Q6ZPD8 337 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 DPPA2Q7Z7J5 298 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 MRPL52Q86TS9 123 aaKnown RBP0.89□□□□□ -2.27
USP3-209ENST00000558925 COMTD1Q86VU5 262 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 SGPP2Q8IWX5 399 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 BLIDQ8IZY5 108 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 ZFP82Q8N141 532 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 ZIC4Q8N9L1 334 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 ZNF738Q8NE65 137 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 OR2M3Q8NG83 312 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 OR4C13Q8NGP0 309 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 FAM45AQ8TCE6 357 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 KLF14Q8TD94 323 aaPredicted RBP0.89□□□□□ -2.27
USP3-209ENST00000558925 C2orf15Q8WU43 125 aaKnown RBP0.89□□□□□ -2.27
USP3-209ENST00000558925 PHF10Q8WUB8 498 aaKnown RBP0.89□□□□□ -2.27
USP3-209ENST00000558925 CCDC12Q8WUD4 166 aaPredicted RBP0.89□□□□□ -2.27
USP3-209ENST00000558925 RORBQ92753 470 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 ZNF514Q96K75 400 aaPredicted RBP0.89□□□□□ -2.27
USP3-209ENST00000558925 PEBP4Q96S96 227 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 APOL4Q9BPW4 351 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 SEC22CQ9BRL7 303 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 FAAP24Q9BTP7 215 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 THTPAQ9BU02 230 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 SCRT1Q9BWW7 348 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 OR51E2Q9H255 320 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 LHX5Q9H2C1 402 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 RDH14Q9HBH5 336 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 DIABLOQ9NR28 239 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 ZNF586Q9NXT0 402 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 TAC3Q9UHF0 121 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 FADS3Q9Y5Q0 445 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 SLC22A7Q9Y694 548 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 MAP3K19Q56UN5 1328 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 NRCAMQ92823 1304 aa0.89□□□□□ -2.27
USP3-209ENST00000558925 LRPPRCP42704 1394 aaKnown RBP0.88□□□□□ -2.27
USP3-209ENST00000558925 IGKV1OR2-108A0A075B7D4 117 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 SPRR5A0A1B0GTR4 108 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 A0A1W2PRG6 482 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 GOLGA8IPA6NC78 632 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 PGPA6NDG6 321 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 A8MWP4 228 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 GOLGA8RI6L899 631 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 K7EPK0 472 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 UPK2O00526 184 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 UBDO15205 165 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 RGS5O15539 181 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 AQP9O43315 295 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 SLC37A4O43826 429 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 ENTPD6O75354 484 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 CDK14O94921 469 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 KCNK2O95069 426 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 IGKV1D-33P01593 117 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 IGKV1-33P01594 117 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 CD5P06127 495 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 SNRPAP09012 282 aaKnown RBP0.88□□□□□ -2.27
USP3-209ENST00000558925 SLC2A1P11166 492 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 ZNF3P17036 446 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 PRTN3P24158 256 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 RPA3P35244 121 aaPredicted RBP0.88□□□□□ -2.27
USP3-209ENST00000558925 MPV17P39210 176 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 CLDN12P56749 244 aa0.88□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms