RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 LIPFP07098 398 aa11.74□□□□□ -0.53
SHMT2-217ENST00000555116 DEFA1P59665 94 aa11.74□□□□□ -0.53
SHMT2-217ENST00000555116 DEFA3P59666 94 aa11.74□□□□□ -0.53
SHMT2-217ENST00000555116 KLF17Q5JT82 389 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-217ENST00000555116 MZT2AQ6P582 158 aa11.74□□□□□ -0.53
SHMT2-217ENST00000555116 UNQ9370/PRO34162Q6UXP9 181 aa11.74□□□□□ -0.53
SHMT2-217ENST00000555116 FAM58AQ8N1B3 248 aa11.74□□□□□ -0.53
SHMT2-217ENST00000555116 ZNF561Q8N587 486 aa11.74□□□□□ -0.53
SHMT2-217ENST00000555116 PNLDC1Q8NA58 520 aaKnown RBP11.74□□□□□ -0.53
SHMT2-217ENST00000555116 TMEM185AQ8NFB2 350 aa11.74□□□□□ -0.53
SHMT2-217ENST00000555116 UPRTQ96BW1 309 aa11.74□□□□□ -0.53
SHMT2-217ENST00000555116 SEBOXQ9HB31 216 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-217ENST00000555116 ELL3Q9HB65 397 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-217ENST00000555116 BOLA2-SMG1P6H3BVE0 249 aa11.73□□□□□ -0.53
SHMT2-217ENST00000555116 HPGDSO60760 199 aa11.73□□□□□ -0.53
SHMT2-217ENST00000555116 SFTPBP07988 381 aa11.73□□□□□ -0.53
SHMT2-217ENST00000555116 TMEM225BP0DP42 221 aa11.73□□□□□ -0.53
SHMT2-217ENST00000555116 NDUFB7P17568 137 aa11.73□□□□□ -0.53
SHMT2-217ENST00000555116 MYL9P24844 172 aa11.73□□□□□ -0.53
SHMT2-217ENST00000555116 BDKRB2P30411 391 aa11.73□□□□□ -0.53
SHMT2-217ENST00000555116 FGF12P61328 243 aa11.73□□□□□ -0.53
SHMT2-217ENST00000555116 BAK1Q16611 211 aa11.73□□□□□ -0.53
SHMT2-217ENST00000555116 KRTAP21-3Q3LHN1 58 aa11.73□□□□□ -0.53
SHMT2-217ENST00000555116 GDPD3Q7L5L3 318 aa11.73□□□□□ -0.53
SHMT2-217ENST00000555116 TPRA1Q86W33 373 aa11.73□□□□□ -0.53
SHMT2-217ENST00000555116 ACOT12Q8WYK0 555 aa11.73□□□□□ -0.53
SHMT2-217ENST00000555116 NKX3-1Q99801 234 aaPredicted RBP11.73□□□□□ -0.53
SHMT2-217ENST00000555116 SOSTQ9BQB4 213 aa11.73□□□□□ -0.53
SHMT2-217ENST00000555116 NEURL2Q9BR09 285 aa11.73□□□□□ -0.53
SHMT2-217ENST00000555116 IFNA2P01563 188 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 CHRM2P08172 466 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 CALCBP10092 127 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 MMP9P14780 707 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 SPNP16150 400 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 PRKACAP17612 351 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 COL10A1Q03692 680 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 ASCL4Q6XD76 172 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 GDPD1Q8N9F7 314 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 PXT1Q8NFP0 134 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 H1FXQ92522 213 aaKnown RBP11.72□□□□□ -0.53
SHMT2-217ENST00000555116 CPNE2Q96FN4 548 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-217ENST00000555116 DMRTB1Q96MA1 342 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 SIRPDQ9H106 197 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 CNTD2Q9H8S5 307 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 RHOFQ9HBH0 211 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 NOX4Q9NPH5 578 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 TBC1D24Q9ULP9 559 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 FOXJ3Q9UPW0 622 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 KIAA2026Q5HYC2 2103 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 TRAV1-2A0A0B4J238 106 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 ZNF737O75373 536 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 HAND1O96004 215 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 IL7P13232 177 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 EPHA1P21709 976 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 DUSP1P28562 367 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 CAPZA1P52907 286 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 ZNF146Q15072 292 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 IDNKQ5T6J7 187 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 CNIH2Q6PI25 160 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 CADM3Q8N126 398 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 SETD6Q8TBK2 473 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 TNFAIP8L1Q8WVP5 186 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 THRSPQ92748 146 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 TBX15Q96SF7 602 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 GPER1Q99527 375 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 FAM234AQ9H0X4 552 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 CKLFQ9UBR5 152 aa11.72□□□□□ -0.53
SHMT2-217ENST00000555116 ATRQ13535 2644 aa11.71□□□□□ -0.53
SHMT2-217ENST00000555116 A0A0G2JK05 382 aa11.71□□□□□ -0.53
SHMT2-217ENST00000555116 TMEM82A0PJX8 343 aa11.71□□□□□ -0.53
SHMT2-217ENST00000555116 K7N7A8 449 aa11.71□□□□□ -0.53
SHMT2-217ENST00000555116 TK1P04183 234 aa11.71□□□□□ -0.53
SHMT2-217ENST00000555116 MAPK3P27361 379 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-217ENST00000555116 ZNF93P35789 620 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-217ENST00000555116 OR3A4PP47883 348 aa11.71□□□□□ -0.53
SHMT2-217ENST00000555116 ARF6P62330 175 aa11.71□□□□□ -0.53
SHMT2-217ENST00000555116 SPIN3Q5JUX0 258 aa11.71□□□□□ -0.53
SHMT2-217ENST00000555116 ELP2Q6IA86 826 aa11.71□□□□□ -0.53
SHMT2-217ENST00000555116 METAP1DQ6UB28 335 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-217ENST00000555116 FIP1L1Q6UN15 594 aaKnown RBP11.71□□□□□ -0.53
SHMT2-217ENST00000555116 KCTD12Q96CX2 325 aaKnown RBP11.71□□□□□ -0.53
SHMT2-217ENST00000555116 NUP50Q9UKX7 468 aa11.71□□□□□ -0.53
SHMT2-217ENST00000555116 CUBNO60494 3623 aa11.71□□□□□ -0.54
SHMT2-217ENST00000555116 TRBV23-1A0A0A0MS06 115 aa11.7□□□□□ -0.54
SHMT2-217ENST00000555116 A0A1W2PQ09 198 aa11.7□□□□□ -0.54
SHMT2-217ENST00000555116 ARL6IP5O75915 188 aa11.7□□□□□ -0.54
SHMT2-217ENST00000555116 APOA1P02647 267 aa11.7□□□□□ -0.54
SHMT2-217ENST00000555116 UCHL1P09936 223 aa11.7□□□□□ -0.54
SHMT2-217ENST00000555116 IGHV4-38-2P0DP08 117 aa11.7□□□□□ -0.54
SHMT2-217ENST00000555116 PTGFRP43088 359 aa11.7□□□□□ -0.54
SHMT2-217ENST00000555116 SNU13P55769 128 aaKnown RBP11.7□□□□□ -0.54
SHMT2-217ENST00000555116 OR10A3P58181 314 aa11.7□□□□□ -0.54
SHMT2-217ENST00000555116 TUSC1Q2TAM9 212 aa11.7□□□□□ -0.54
SHMT2-217ENST00000555116 PYDC2Q56P42 97 aa11.7□□□□□ -0.54
SHMT2-217ENST00000555116 SFXN4Q6P4A7 337 aa11.7□□□□□ -0.54
SHMT2-217ENST00000555116 CCBE1Q6UXH8 406 aaPredicted RBP11.7□□□□□ -0.54
SHMT2-217ENST00000555116 C17orf107Q6ZR85 190 aa11.7□□□□□ -0.54
SHMT2-217ENST00000555116 LYPD6Q86Y78 171 aa11.7□□□□□ -0.54
SHMT2-217ENST00000555116 Q8NFD4 153 aa11.7□□□□□ -0.54
SHMT2-217ENST00000555116 KPTNQ9Y664 436 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms