RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 OR8U1Q8NH10 309 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 KIRREL1Q96J84 757 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 OPN3Q9H1Y3 402 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-215ENST00000552823 FAM208BQ5VWN6 2430 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 PCP4L1A6NKN8 68 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 HMSDA8MTL9 139 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 K7EPK0 472 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 GPR31O00270 319 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 KLK10O43240 276 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 PDCD6O75340 191 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 NXPH2O95156 264 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 SLC34A2O95436 690 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 ZNF708P17019 499 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 CHATP28329 748 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 ZNF169Q14929 603 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-215ENST00000552823 PAN3Q58A45 887 aaKnown RBP4.8□□□□□ -1.64
LIMA1-215ENST00000552823 FAM201AQ5SY85 155 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 RGS7BPQ6MZT1 257 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-215ENST00000552823 SLC25A24Q6NUK1 477 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 ZNF529Q6P280 563 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 LHFPL2Q6ZUX7 228 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 ZNF695Q8IW36 515 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 GAPTQ8N292 157 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 ARRDC1Q8N5I2 433 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 FAM71E2Q8N5Q1 922 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 SLC25A40Q8TBP6 338 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 HPSE2Q8WWQ2 592 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 ERGIC1Q969X5 290 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 WBP1Q96G27 269 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 TSNAXQ99598 290 aaKnown RBP4.8□□□□□ -1.64
LIMA1-215ENST00000552823 DCTN5Q9BTE1 182 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 NECAP2Q9NVZ3 263 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 ERRFI1Q9UJM3 462 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-215ENST00000552823 TRAPPC2LQ9UL33 140 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 OSGIN2Q9Y236 505 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 SMG1Q96Q15 3661 aaKnown RBP4.8□□□□□ -1.64
LIMA1-215ENST00000552823 ANKHD1Q8IWZ3 2542 aaKnown RBP4.8□□□□□ -1.64
LIMA1-215ENST00000552823 IGKV1D-13A0A0B4J2D9 117 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 A0A0D9SG52 128 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 NKX2-6A6NCS4 301 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 SERPINE3A8MV23 424 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 F8W036 122 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 WRBO00258 174 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 DEGS1O15121 323 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 BCL2L11O43521 198 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 TUSC2O75896 110 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 SCGNO76038 276 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 IGKV1-13P0DP09 117 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 IAPPP10997 89 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 CCL1P22362 96 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 RPL12P30050 165 aaKnown RBP4.8□□□□□ -1.64
LIMA1-215ENST00000552823 HOXC12P31275 282 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 ZNF83P51522 516 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 TAS2R31P59538 309 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 BLOC1S1P78537 153 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 PNLIPRP3Q17RR3 467 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 ABLIM2Q6H8Q1 611 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 C20orf204Q6ZNR8 217 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 KCNRGQ8N5I3 272 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 OR10V1Q8NGI7 309 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 PTX4Q96A99 478 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 SPSB1Q96BD6 273 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 C2orf50Q96LR7 162 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 SCGB3A2Q96PL1 93 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 OCSTAMPQ9BR26 566 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 ZPBPQ9BS86 351 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 GPR87Q9BY21 358 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 ALX4Q9H161 411 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-215ENST00000552823 FANCFQ9NPI8 374 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 SLC2A9Q9NRM0 540 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 KCNMB2Q9Y691 235 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 TNRC6AQ8NDV7 1962 aaKnown RBP4.8□□□□□ -1.64
LIMA1-215ENST00000552823 TTLL8A6PVC2 850 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 K7EM74 188 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 TOR1AO14656 332 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 SOX15O60248 233 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 OR2F2O95006 317 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 IL18BPO95998 194 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 ZNF806P0C7X5 589 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 OTX1P32242 354 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-215ENST00000552823 GABRA2P47869 451 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 RBM11P57052 281 aaKnown RBP4.79□□□□□ -1.64
LIMA1-215ENST00000552823 SSBP1Q04837 148 aaKnown RBP4.79□□□□□ -1.64
LIMA1-215ENST00000552823 MPPED2Q15777 294 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 SWI5Q1ZZU3 235 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 CXorf66Q5JRM2 361 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-215ENST00000552823 BEND4Q6ZU67 534 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 IQCF2Q8IXL9 164 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 BAP18Q8IXM2 172 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 OR6K3Q8NGY3 331 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 APOBEC3DQ96AK3 386 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-215ENST00000552823 LRRC46Q96FV0 321 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 TP53RKQ96S44 253 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 DDA1Q9BW61 102 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 C12orf4Q9NQ89 552 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 OR1A1Q9P1Q5 309 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 FBXL17Q9UF56 701 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 PCSK5Q92824 1860 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 IGHV3OR15-7A0A075B7D8 119 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 FAM74A7A6NL05 159 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms