RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 SUCNR1Q9BXA5 334 aa6.46□□□□□ -1.38
LIMA1-213ENST00000552720 ZNF286AQ9HBT8 521 aa6.46□□□□□ -1.38
LIMA1-213ENST00000552720 GPR35Q9HC97 309 aa6.46□□□□□ -1.38
LIMA1-213ENST00000552720 C19orf12Q9NSK7 152 aa6.46□□□□□ -1.38
LIMA1-213ENST00000552720 hCG_1809904A0A1W2PP81 198 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 A0A1W2PR64 198 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 A0A1W2PRV1 198 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 M0R036 132 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 ST8SIA3O43173 380 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 PDGFBP01127 241 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-213ENST00000552720 P04436 131 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 GLAP06280 429 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 SEC11BP0C7V7 166 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 OR13C7P0DN81 318 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 ZNF44P15621 663 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 BCL3P20749 454 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 GNRHRP30968 328 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 SRD5A2P31213 254 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 FUT6P51993 359 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 HERV-K104P61576 105 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 CCL20P78556 96 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 EWSR1Q01844 656 aaKnown RBP eCLIP6.45□□□□□ -1.38
LIMA1-213ENST00000552720 MALLQ13021 153 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 IGFBP7Q16270 282 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 KRTAP27-1Q3LI81 207 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 KRBOX4Q5JUW0 171 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 LGI3Q8N145 548 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 LRTM2Q8N967 370 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 SLAMF9Q96A28 289 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 ADGRG7Q96K78 797 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 SMCO4Q9NRQ5 59 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 SLC7A10Q9NS82 523 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 SLC7A11Q9UPY5 501 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 KPTNQ9Y664 436 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 ZFHX4Q86UP3 3567 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 COL27A1Q8IZC6 1860 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-213ENST00000552720 IGKV1D-13A0A0B4J2D9 117 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 C3orf85A0A1B0GTC6 90 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 IGSF23A1L1A6 192 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 ZNF503-AS2A6NEH8 195 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 CDRT15L2A8MXV6 281 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 ACAA1P09110 424 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-213ENST00000552720 MMP7P09237 267 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-213ENST00000552720 SCTP09683 121 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 IGKV1-13P0DP09 117 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 FOLR3P41439 243 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 SRYQ05066 204 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 OR8B8Q15620 311 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 TSC22D1Q15714 1073 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 CXorf66Q5JRM2 361 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-213ENST00000552720 SPIN3Q5JUX0 258 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 ZNF818PQ6ZRF7 136 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 PPP1R32Q7Z5V6 425 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 CCDC54Q8NEL0 328 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 OR56B2PQ8NGI1 322 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 OR4D5Q8NGN0 318 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 FAM213BQ8TBF2 198 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 BOD1Q96IK1 185 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 RSRP1Q9BUV0 290 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 PAPOLGQ9BWT3 736 aaKnown RBP6.45□□□□□ -1.38
LIMA1-213ENST00000552720 SMOC1Q9H4F8 434 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 RGCCQ9H4X1 137 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 RNF122Q9H9V4 155 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 TNRC6AQ8NDV7 1962 aaKnown RBP6.45□□□□□ -1.38
LIMA1-213ENST00000552720 KNTC1P50748 2209 aa6.45□□□□□ -1.38
LIMA1-213ENST00000552720 DOCK11Q5JSL3 2073 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 BORCS7-ASMTA0A0B4J1R7 106 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 ZNF816-ZNF321PA0A0X1KG74 233 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 A0A1W2PPE2 198 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 PQLC2LA1A4F0 135 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 GJE1A6NN92 205 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 UMAD1C9J7I0 102 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 MPPED1O15442 326 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 TNFSF12O43508 249 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 SSSCA1O60232 199 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 CELA3AP09093 270 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 FUT3P21217 361 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 ITGA3P26006 1051 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 GDF1P27539 372 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 GLP1RP43220 463 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 MEOX2P50222 304 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 IL13RA2Q14627 380 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 HERPUD1Q15011 391 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 TRIM61Q5EBN2 209 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 ABLIM2Q6H8Q1 611 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 SLC16A13Q7RTY0 426 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 TBC1D26Q86UD7 250 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 ODF3L1Q8IXM7 274 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 FAM24BQ8N5W8 94 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 ZFP62Q8NB50 900 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-213ENST00000552720 CD300LFQ8TDQ1 290 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 TMEM171Q8WVE6 324 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 EXTL1Q92935 676 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 SYT3Q9BQG1 590 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 PRRG4Q9BZD6 226 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 LUZP4Q9P127 313 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 FBXO9Q9UK97 447 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-213ENST00000552720 R4GN57 208 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 ZNF724A8MTY0 619 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 NTN3O00634 580 aaPredicted RBP6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms