RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 AFF3P51826 1226 aaKnown RBP4.68□□□□□ -1.66
LIMA1-212ENST00000552491 CEBPGP53567 150 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 UCP3P55916 312 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 RAB2AP61019 212 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 RUNX1Q01196 453 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 KIAA0141Q14154 515 aaPredicted RBP4.68□□□□□ -1.66
LIMA1-212ENST00000552491 GNMTQ14749 295 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 SHBQ15464 509 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 HIKESHIQ53FT3 197 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 C4orf48Q5BLP8 95 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 OR2B11Q5JQS5 317 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 CXorf66Q5JRM2 361 aaPredicted RBP4.68□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF468Q5VIY5 522 aaPredicted RBP4.68□□□□□ -1.66
LIMA1-212ENST00000552491 GFI1BQ5VTD9 330 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF774Q6NX45 483 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 SPNS3Q6ZMD2 512 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 SUMF2Q8NBJ7 301 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 OR8G5Q8NG78 346 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 OR2G3Q8NGZ4 309 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 SPSB1Q96BD6 273 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 MOB3AQ96BX8 217 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 SPACA9Q96E40 222 aaPredicted RBP4.68□□□□□ -1.66
LIMA1-212ENST00000552491 OR6C1Q96RD1 312 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 TOLLIPQ9H0E2 274 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 UNKLQ9H9P5 680 aaKnown RBP4.68□□□□□ -1.66
LIMA1-212ENST00000552491 P4HTMQ9NXG6 502 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 DOK5Q9P104 306 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 WNT16Q9UBV4 365 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 FOXD3Q9UJU5 478 aaPredicted RBP4.68□□□□□ -1.66
LIMA1-212ENST00000552491 DMRT1Q9Y5R6 373 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 LIPGQ9Y5X9 500 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 URGCP-MRPS24S4R325 110 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 PI4KAP42356 2102 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 NCKAP5O14513 1909 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 BTBD17A6NE02 478 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 YKT6O15498 198 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 SYNGR3O43761 229 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 ZFAND5O76080 213 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 GNRHRP30968 328 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 CDX1P47902 265 aaPredicted RBP4.68□□□□□ -1.66
LIMA1-212ENST00000552491 NDUFA6P56556 154 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF266Q14584 549 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 ICAM4Q14773 271 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 ELOBQ15370 118 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 ASCL4Q6XD76 172 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 OR2C3Q8N628 320 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 CYB561D1Q8N8Q1 229 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 FGFBP3Q8TAT2 258 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 PRR7Q8TB68 274 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 SPTSSAQ969W0 71 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 PROK2Q9HC23 129 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 ST3GAL6Q9Y274 331 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 DIDO1Q9BTC0 2240 aaKnown RBP4.67□□□□□ -1.66
LIMA1-212ENST00000552491 CHD3Q12873 2000 aaKnown RBP4.67□□□□□ -1.66
LIMA1-212ENST00000552491 A0A087WWC5 75 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 TGIF2-C20orf24A0A0A6YYL0 155 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF729A6NN14 1252 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF587BE7ETH6 402 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 MPPED1O15442 326 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 SSSCA1O60232 199 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 ZIC3O60481 467 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 CST7O76096 145 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 CDS2O95674 445 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 LY86O95711 162 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 PPYP01298 95 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 KLK3P07288 261 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-212ENST00000552491 NPBWR2P48146 333 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 WDR74Q6RFH5 385 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF600Q6ZNG1 722 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 RABEPKQ7Z6M1 372 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 CALHM1Q8IU99 346 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 TMEM252Q8N6L7 170 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 CCDC71LQ8N9Z2 235 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 OR5C1Q8NGR4 320 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 OR14L1PQ8NHC6 308 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 SRXN1Q9BYN0 137 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 ARHGAP21Q5T5U3 1957 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 DOCK7Q96N67 2140 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 A0A0J9YW62 118 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 C3orf85A0A1B0GTC6 90 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 CXorf65A6NEN9 183 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 TRDCB7Z8K6 153 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 NPIPA2E9PIF3 369 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 NPIPA3F8WFD2 350 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 HIST1H2BKO60814 126 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 SCRG1O75711 98 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 VAMP5O95183 116 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 LCATP04180 440 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 HIST1H2BJP06899 126 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 SOD3P08294 240 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 CCL3P10147 92 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 HIST1H2BOP23527 126 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 HIST1H2BBP33778 126 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 TAGLN2P37802 199 aaKnown RBP4.67□□□□□ -1.66
LIMA1-212ENST00000552491 PLA2G5P39877 138 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 NKX2-1P43699 371 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-212ENST00000552491 RBP2P50120 134 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 DYNLT3P51808 116 aa4.67□□□□□ -1.66
LIMA1-212ENST00000552491 HIST1H2BDP58876 126 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms