RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 KLF3P57682 345 aaPredicted RBP2.13□□□□□ -2.07
VPS29-205ENST00000548539 OR10A3P58181 314 aa2.13□□□□□ -2.07
VPS29-205ENST00000548539 FLOT2Q14254 428 aa2.13□□□□□ -2.07
VPS29-205ENST00000548539 KRTAP21-2Q3LI59 83 aa2.13□□□□□ -2.07
VPS29-205ENST00000548539 MRPL2Q5T653 305 aaKnown RBP2.13□□□□□ -2.07
VPS29-205ENST00000548539 ZNF660Q6AZW8 331 aaPredicted RBP2.13□□□□□ -2.07
VPS29-205ENST00000548539 ADM2Q7Z4H4 148 aa2.13□□□□□ -2.07
VPS29-205ENST00000548539 NT5DC3Q86UY8 548 aa2.13□□□□□ -2.07
VPS29-205ENST00000548539 CALHM3Q86XJ0 350 aa2.13□□□□□ -2.07
VPS29-205ENST00000548539 AMN1Q8IY45 258 aa2.13□□□□□ -2.07
VPS29-205ENST00000548539 ZFP82Q8N141 532 aa2.13□□□□□ -2.07
VPS29-205ENST00000548539 OR2M3Q8NG83 312 aa2.13□□□□□ -2.07
VPS29-205ENST00000548539 ACTL9Q8TC94 416 aa2.13□□□□□ -2.07
VPS29-205ENST00000548539 YIPF5Q969M3 257 aa2.13□□□□□ -2.07
VPS29-205ENST00000548539 OR2V2Q96R30 315 aa2.13□□□□□ -2.07
VPS29-205ENST00000548539 SUCNR1Q9BXA5 334 aa2.13□□□□□ -2.07
VPS29-205ENST00000548539 TSGA10Q9BZW7 698 aa2.13□□□□□ -2.07
VPS29-205ENST00000548539 TRIM45Q9H8W5 580 aaPredicted RBP2.13□□□□□ -2.07
VPS29-205ENST00000548539 BTRCQ9Y297 605 aa2.13□□□□□ -2.07
VPS29-205ENST00000548539 ICOSQ9Y6W8 199 aa2.13□□□□□ -2.07
VPS29-205ENST00000548539 TICRRQ7Z2Z1 1910 aa2.13□□□□□ -2.07
VPS29-205ENST00000548539 IGKV1OR2-108A0A075B7D4 117 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 A0A1W2PRG6 482 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 GMNCA6NCL1 334 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 HSBP1L1C9JCN9 74 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 RNASEK-C17orf49H0YIS7 233 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 K7ERS5 55 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 FABP7O15540 132 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 NEMFO60524 1076 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 BRI3O95415 125 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 SNAP29O95721 258 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 SLC35E2BP0CK96 405 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 INAFM2P0DMQ5 153 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 SLC2A1P11166 492 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 SPNP16150 400 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 PRPS1L1P21108 318 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 CASQ1P31415 396 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 TGFBR2P37173 567 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 ZNF83P51522 516 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 BIKQ13323 160 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 RAB31Q13636 194 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 ENDOGQ14249 297 aaKnown RBP2.12□□□□□ -2.07
VPS29-205ENST00000548539 USF2Q15853 346 aaPredicted RBP2.12□□□□□ -2.07
VPS29-205ENST00000548539 IGFBP7Q16270 282 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 DGAT2L6Q6ZPD8 337 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 USP50Q70EL3 339 aaPredicted RBP2.12□□□□□ -2.07
VPS29-205ENST00000548539 TMEM25Q86YD3 366 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 PHF10Q8WUB8 498 aaKnown RBP2.12□□□□□ -2.07
VPS29-205ENST00000548539 ACBD6Q9BR61 282 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 TXNIPQ9H3M7 391 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 DSN1Q9H410 356 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 ABCB11O95342 1321 aa2.12□□□□□ -2.07
VPS29-205ENST00000548539 TNKS1BP1Q9C0C2 1729 aaKnown RBP2.11□□□□□ -2.07
VPS29-205ENST00000548539 ERICH2A1L162 156 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 GOLGA6L4A6NEF3 574 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 ZNF729A6NN14 1252 aaPredicted RBP2.11□□□□□ -2.07
VPS29-205ENST00000548539 F5H5P2 479 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 I3L4J1 428 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 PDCD6O75340 191 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 IGKV1D-33P01593 117 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 IGKV1-33P01594 117 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 GP1BAP07359 652 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 MLNP12872 115 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 GTF2F2P13984 249 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 PSMB9P28065 219 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 SLC9A3R2Q15599 337 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 OR4D1Q15615 310 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 PDZD11Q5EBL8 140 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 ZNF470Q6ECI4 717 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 ELP2Q6IA86 826 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 LAIR2Q6ISS4 152 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 PAGE2Q7Z2X7 111 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 OR8A1Q8NGG7 326 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 GTF2H4Q92759 462 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 MAL2Q969L2 176 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 CCDC127Q96BQ5 260 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 MRAP2Q96G30 205 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 OLFM3Q96PB7 478 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 BBS2Q9BXC9 721 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 GABARAPL1Q9H0R8 117 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 MS4A12Q9NXJ0 267 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 ZNF586Q9NXT0 402 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 CFAP45Q9UL16 551 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 R4GN34 69 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 ADGRL1O94910 1474 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 BAZ1BQ9UIG0 1483 aaKnown RBP2.11□□□□□ -2.07
VPS29-205ENST00000548539 LOXHD1Q8IVV2 1947 aa2.11□□□□□ -2.07
VPS29-205ENST00000548539 IGHV3-21A0A0B4J1V1 117 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 IGHV3-43A0A0B4J1X8 118 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 A0A0B4J2C4 111 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 A0A1B0GX12 115 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 A0A1W2PNN7 141 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 H3BQ85 93 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 NDUFS6O75380 124 aaKnown RBP2.1□□□□□ -2.07
VPS29-205ENST00000548539 CA2P00918 260 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 IGHMP01871 453 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 RD3LP0DJH9 198 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 PTHLHP12272 177 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 HRES1P13985 223 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 ZNF3P17036 446 aa2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms