RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 SPRY3O43610 288 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 ZNF83P51522 516 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 PLGLAQ15195 96 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 ZNF610Q8N9Z0 462 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 CLEC18CQ8NCF0 446 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 ISOC2Q96AB3 205 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 PIK3IP1Q96FE7 263 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 OR10C1Q96KK4 312 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 SERTAD4Q9NUC0 356 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 CACNG5Q9UF02 275 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 IL17BQ9UHF5 180 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 PROCRQ9UNN8 238 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 PRELID3BQ9Y3B1 194 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 ABCA1O95477 2261 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 DENND4CQ5VZ89 1909 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 C1QL1O75973 258 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 MZT1Q08AG7 82 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 RNPS1Q15287 305 aaKnown RBP13.65□□□□□ -0.22
CUX1-211ENST00000546411 OR2A2Q6IF42 318 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 C19orf12Q9NSK7 152 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 ATPIF1Q9UII2 106 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 GPR132Q9UNW8 380 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 A0A0G2JMM0 328 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 A0A1W2PPB8 328 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 A0A1W2PRS3 328 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 TMEM218A2RU14 115 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 KIR3DP1A8MWS1 328 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 NPIPB7O75200 414 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 AGFG2O95081 481 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 ANKRD55Q3KP44 614 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 ERGIC1Q969X5 290 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 GALMQ96C23 342 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 C5orf66Q9H5L9 145 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 THADAQ6YHU6 1953 aa13.65□□□□□ -0.23
CUX1-211ENST00000546411 ENSAO43768 121 aaKnown RBP13.64□□□□□ -0.23
CUX1-211ENST00000546411 HEXAP06865 529 aa13.64□□□□□ -0.23
CUX1-211ENST00000546411 TAS2R30P59541 319 aa13.64□□□□□ -0.23
CUX1-211ENST00000546411 KIAA0141Q14154 515 aaPredicted RBP13.64□□□□□ -0.23
CUX1-211ENST00000546411 GNPNAT1Q96EK6 184 aaPredicted RBP13.64□□□□□ -0.23
CUX1-211ENST00000546411 NMES1Q9C002 83 aa13.64□□□□□ -0.23
CUX1-211ENST00000546411 SHARPINQ9H0F6 387 aa13.64□□□□□ -0.23
CUX1-211ENST00000546411 PIPOXQ9P0Z9 390 aa13.64□□□□□ -0.23
CUX1-211ENST00000546411 ZNF319Q9P2F9 582 aa13.64□□□□□ -0.23
CUX1-211ENST00000546411 FRMPD3Q5JV73 1810 aa13.64□□□□□ -0.23
CUX1-211ENST00000546411 NKX2-6A6NCS4 301 aa13.64□□□□□ -0.23
CUX1-211ENST00000546411 LINC01387J3KSC0 135 aa13.64□□□□□ -0.23
CUX1-211ENST00000546411 S100A12P80511 92 aa13.64□□□□□ -0.23
CUX1-211ENST00000546411 PLAC9Q5JTB6 97 aa13.64□□□□□ -0.23
CUX1-211ENST00000546411 FGF11Q92914 225 aa13.64□□□□□ -0.23
CUX1-211ENST00000546411 ARV1Q9H2C2 271 aa13.64□□□□□ -0.23
CUX1-211ENST00000546411 RD3LP0DJH9 198 aa13.64□□□□□ -0.23
CUX1-211ENST00000546411 GPR12P47775 334 aa13.64□□□□□ -0.23
CUX1-211ENST00000546411 OR3A1P47881 315 aa13.64□□□□□ -0.23
CUX1-211ENST00000546411 NOVA1P51513 510 aaKnown RBP13.64□□□□□ -0.23
CUX1-211ENST00000546411 HMGN3Q15651 99 aa13.64□□□□□ -0.23
CUX1-211ENST00000546411 NFAM1Q8NET5 270 aaPredicted RBP13.64□□□□□ -0.23
CUX1-211ENST00000546411 PHYHIPLQ96FC7 376 aa13.64□□□□□ -0.23
CUX1-211ENST00000546411 ADGRG7Q96K78 797 aa13.64□□□□□ -0.23
CUX1-211ENST00000546411 CHRNA10Q9GZZ6 450 aa13.64□□□□□ -0.23
CUX1-211ENST00000546411 MMP26Q9NRE1 261 aa13.64□□□□□ -0.23
CUX1-211ENST00000546411 ARPC4-TTLL3A0A0A6YYG9 625 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 A0A1W2PNV4 684 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 MPPED1O15442 326 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 EFNA2O43921 213 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 OR2A4O95047 310 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 CASP6P55212 293 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 NHLH2Q02577 135 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 COL19A1Q14993 1142 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 SLC36A1Q7Z2H8 476 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 TMEM251Q8N6I4 163 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 MRGPRDQ8TDS7 321 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 OR2A7Q96R45 310 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 RIMS4Q9H426 269 aaPredicted RBP13.63□□□□□ -0.23
CUX1-211ENST00000546411 UQCC1Q9NVA1 299 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 TREM2Q9NZC2 230 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 ZNF107Q9UII5 783 aaPredicted RBP13.63□□□□□ -0.23
CUX1-211ENST00000546411 A0A0U1RQV5 110 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 C3orf80F5H4A9 247 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 FCGR3AP08637 254 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 KITLGP21583 273 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 BMP5P22003 454 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 TMEM65Q6PI78 240 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 RBMS3Q6XE24 437 aaKnown RBP13.63□□□□□ -0.23
CUX1-211ENST00000546411 LIAT1Q6ZQX7 453 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 WFDC8Q8IUA0 241 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 SCCPDHQ8NBX0 429 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 TTTY12Q9BZ98 90 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 MSL2Q9HCI7 577 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 UBE2L5PA0A1B0GUS4 154 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 TMEM14DPA8MWL7 114 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 CELA3AP09093 270 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 NPBWR2P48146 333 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 P2RY4P51582 365 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 PPP1CBP62140 327 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 LFNGQ8NES3 379 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 MRPS24Q96EL2 167 aaKnown RBP13.63□□□□□ -0.23
CUX1-211ENST00000546411 LIN7CQ9NUP9 197 aaKnown RBP13.63□□□□□ -0.23
CUX1-211ENST00000546411 GAB2Q9UQC2 676 aa13.63□□□□□ -0.23
CUX1-211ENST00000546411 ZNF705GA8MUZ8 300 aaPredicted RBP13.63□□□□□ -0.23
CUX1-211ENST00000546411 KLK10O43240 276 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms