RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 DUSP3P51452 185 aaPredicted RBP7.77□□□□□ -1.17
YBX3-208ENST00000540447 ZP1P60852 638 aa7.77□□□□□ -1.17
YBX3-208ENST00000540447 TMEFF1Q8IYR6 380 aa7.77□□□□□ -1.17
YBX3-208ENST00000540447 DNASE2BQ8WZ79 361 aa7.77□□□□□ -1.17
YBX3-208ENST00000540447 SSBP4Q9BWG4 385 aaPredicted RBP7.77□□□□□ -1.17
YBX3-208ENST00000540447 PDLIM7Q9NR12 457 aa7.77□□□□□ -1.17
YBX3-208ENST00000540447 ICAM5Q9UMF0 924 aa7.77□□□□□ -1.17
YBX3-208ENST00000540447 IFT172Q9UG01 1749 aa7.77□□□□□ -1.17
YBX3-208ENST00000540447 TRAV39A0A0B4J263 110 aa7.77□□□□□ -1.17
YBX3-208ENST00000540447 SERF2P84101 59 aa7.77□□□□□ -1.17
YBX3-208ENST00000540447 OR4P4Q8NGL7 312 aa7.77□□□□□ -1.17
YBX3-208ENST00000540447 ZNF775Q96BV0 537 aaPredicted RBP7.77□□□□□ -1.17
YBX3-208ENST00000540447 S1PR3Q99500 378 aa7.77□□□□□ -1.17
YBX3-208ENST00000540447 EMC6Q9BV81 110 aa7.77□□□□□ -1.17
YBX3-208ENST00000540447 COMMD5Q9GZQ3 224 aa7.77□□□□□ -1.17
YBX3-208ENST00000540447 B9D1Q9UPM9 204 aa7.77□□□□□ -1.17
YBX3-208ENST00000540447 TRAV8-2A0A0B4J237 113 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 A0A1W2PP55 124 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 TNFSF13O75888 250 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 OR1D5P58170 312 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 UBE2L3P68036 154 aaKnown RBP7.76□□□□□ -1.17
YBX3-208ENST00000540447 DMRTC1Q5HYR2 192 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 C1orf194Q5T5A4 169 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 ABHD17CQ6PCB6 329 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 SLC25A26Q70HW3 274 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 OR1N2Q8NGR9 330 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 OR2K2Q8NGT1 345 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 OR8B2Q96RD0 313 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 SIGLEC7Q9Y286 467 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 COL5A2P05997 1499 aaPredicted RBP7.76□□□□□ -1.17
YBX3-208ENST00000540447 A0A1W2PQU0 124 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 COLCA2A8K830 154 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 PPIAL4DF5H284 164 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 EREGO14944 169 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 GREM1O60565 184 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 CD40P25942 277 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 COL8A1P27658 744 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 WNT5AP41221 380 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 ZNF121P58317 390 aaPredicted RBP7.76□□□□□ -1.17
YBX3-208ENST00000540447 GAGE2BQ13066 116 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 GAGE2EQ4V326 116 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 AAED1Q7RTV5 226 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 G6PC2Q9NQR9 355 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 MRPL16Q9NX20 251 aaKnown RBP7.76□□□□□ -1.17
YBX3-208ENST00000540447 GAGE2DQ9UEU5 116 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 TUBD1Q9UJT1 453 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 SH2D1BO14796 132 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 TYMSP04818 313 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 LINC00869P0C866 280 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 SHBQ15464 509 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 CCSMST1Q4G0I0 132 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 SLC25A30Q5SVS4 291 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 TBC1D26Q86UD7 250 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 ZNF595Q8IYB9 648 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 OR5AS1Q8N127 324 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 NUP37Q8NFH4 326 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 RPEQ96AT9 228 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 A0A1B0GTH9 108 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 M0R135 149 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 BCAT2O15382 392 aaPredicted RBP7.76□□□□□ -1.17
YBX3-208ENST00000540447 SLCO2B1O94956 709 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 SP1P08047 785 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 GPR183P32249 361 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 CCR5P51681 352 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 SRSF4Q08170 494 aaKnown RBP7.76□□□□□ -1.17
YBX3-208ENST00000540447 ZNF799Q96GE5 643 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 HDHD3Q9BSH5 251 aaPredicted RBP7.76□□□□□ -1.17
YBX3-208ENST00000540447 TMEM204Q9BSN7 226 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 AAMDCQ9H7C9 122 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.76□□□□□ -1.17
YBX3-208ENST00000540447 C7orf71A4D174 169 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 NKX2-6A6NCS4 301 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 SELEP16581 610 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 FUT5Q11128 374 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 POM121L2Q96KW2 1035 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 TMEM56Q96MV1 263 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 CPEB1Q9BZB8 566 aaKnown RBP7.76□□□□□ -1.17
YBX3-208ENST00000540447 PRDM13Q9H4Q3 707 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 TMEM106BQ9NUM4 274 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 HCFC1R1Q9NWW0 138 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 KCNE3Q9Y6H6 103 aa7.76□□□□□ -1.17
YBX3-208ENST00000540447 ARHGEF28Q8N1W1 1705 aaKnown RBP7.75□□□□□ -1.17
YBX3-208ENST00000540447 M0R296 226 aa7.75□□□□□ -1.17
YBX3-208ENST00000540447 SNAI2O43623 268 aa7.75□□□□□ -1.17
YBX3-208ENST00000540447 S100A4P26447 101 aaKnown RBP7.75□□□□□ -1.17
YBX3-208ENST00000540447 SLC25A1P53007 311 aa7.75□□□□□ -1.17
YBX3-208ENST00000540447 CLDN18P56856 261 aa7.75□□□□□ -1.17
YBX3-208ENST00000540447 UNQ5815/PRO19632Q6UWF5 114 aa7.75□□□□□ -1.17
YBX3-208ENST00000540447 OR4X1Q8NH49 305 aa7.75□□□□□ -1.17
YBX3-208ENST00000540447 WDYHV1Q96HA8 205 aa7.75□□□□□ -1.17
YBX3-208ENST00000540447 TPSD1Q9BZJ3 242 aa7.75□□□□□ -1.17
YBX3-208ENST00000540447 PHRF1Q9P1Y6 1649 aaKnown RBP7.75□□□□□ -1.17
YBX3-208ENST00000540447 METTL12A8MUP2 240 aa7.75□□□□□ -1.17
YBX3-208ENST00000540447 KLF4O43474 513 aa7.75□□□□□ -1.17
YBX3-208ENST00000540447 MRPL33O75394 65 aaKnown RBP7.75□□□□□ -1.17
YBX3-208ENST00000540447 PAX2Q02962 417 aa7.75□□□□□ -1.17
YBX3-208ENST00000540447 P2RY6Q15077 328 aa7.75□□□□□ -1.17
YBX3-208ENST00000540447 TMEM249Q2WGJ8 235 aa7.75□□□□□ -1.17
YBX3-208ENST00000540447 OCIAD2Q56VL3 154 aa7.75□□□□□ -1.17
YBX3-208ENST00000540447 TGIF2LYQ8IUE0 185 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms