RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 SUMO3P55854 103 aaPredicted RBP11.3□□□□□ -0.6
MSH6-210ENST00000540021 GAMTQ14353 236 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 THOC3Q96J01 351 aaKnown RBP11.3□□□□□ -0.6
MSH6-210ENST00000540021 OPA3Q9H6K4 179 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 WFDC1Q9HC57 220 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 ZNF581Q9P0T4 197 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 HDGFL3Q9Y3E1 203 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 RANBP2P49792 3224 aaKnown RBP11.3□□□□□ -0.6
MSH6-210ENST00000540021 ZNF814B7Z6K7 855 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 BCAT2O15382 392 aaPredicted RBP11.29□□□□□ -0.6
MSH6-210ENST00000540021 TRAF3IP2O43734 574 aaPredicted RBP11.29□□□□□ -0.6
MSH6-210ENST00000540021 GABRA4P48169 554 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 CTAG1AP78358 180 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 ZP4Q12836 540 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 LTC4SQ16873 150 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 PLPPR5Q32ZL2 321 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 WDFY1Q8IWB7 410 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 OR4F5Q8NH21 305 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 OR4F4Q96R69 305 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 RSG1Q9BU20 258 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 CCL28Q9NRJ3 127 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 OBSL1O75147 1896 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 PDCD6O75340 191 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 GDF1P27539 372 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 SRSF4Q08170 494 aaKnown RBP11.29□□□□□ -0.6
MSH6-210ENST00000540021 GFI1BQ5VTD9 330 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 LHFPL2Q6ZUX7 228 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 TMEM252Q8N6L7 170 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 SPSB1Q96BD6 273 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 TRAPPC2LQ9UL33 140 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 MTCH2Q9Y6C9 303 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 KIAA2026Q5HYC2 2103 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 CELA2AP08217 269 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 BAXQ07812 192 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 WDR25Q64LD2 544 aaPredicted RBP11.29□□□□□ -0.6
MSH6-210ENST00000540021 NCR3LG1Q68D85 454 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 ZNF705AQ6ZN79 300 aaPredicted RBP11.29□□□□□ -0.6
MSH6-210ENST00000540021 OR1F12Q8NHA8 337 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 CALHM2Q9HA72 323 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 AURKAIP1Q9NWT8 199 aaPredicted RBP11.29□□□□□ -0.6
MSH6-210ENST00000540021 PCNX3Q9H6A9 2034 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 DNAJC13O75165 2243 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 OR5H1A6NKK0 313 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 PGA5P0DJD9 388 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 HBG1P69891 147 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 HBG2P69892 147 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 ZXDAP98168 799 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.29□□□□□ -0.6
MSH6-210ENST00000540021 OR10AD1Q8NGE0 317 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 OR10J5Q8NHC4 309 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 TP53RKQ96S44 253 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 RASL10BQ96S79 203 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 ZNF665Q9H7R5 613 aa11.29□□□□□ -0.6
MSH6-210ENST00000540021 PATZ1Q9HBE1 687 aaKnown RBP11.29□□□□□ -0.6
MSH6-210ENST00000540021 UBE2L5PA0A1B0GUS4 154 aa11.28□□□□□ -0.6
MSH6-210ENST00000540021 EPOPA6NHQ4 379 aa11.28□□□□□ -0.6
MSH6-210ENST00000540021 ADPRHL1Q8NDY3 354 aa11.28□□□□□ -0.6
MSH6-210ENST00000540021 OR1K1Q8NGR3 316 aa11.28□□□□□ -0.6
MSH6-210ENST00000540021 NTNG2Q96CW9 530 aa11.28□□□□□ -0.6
MSH6-210ENST00000540021 KIAA1549LQ6ZVL6 1849 aa11.28□□□□□ -0.6
MSH6-210ENST00000540021 C2CD4DB7Z1M9 353 aa11.28□□□□□ -0.6
MSH6-210ENST00000540021 MASP2O00187 686 aa11.28□□□□□ -0.6
MSH6-210ENST00000540021 MRPL33O75394 65 aaKnown RBP11.28□□□□□ -0.6
MSH6-210ENST00000540021 CDX1P47902 265 aaPredicted RBP11.28□□□□□ -0.6
MSH6-210ENST00000540021 SSR4P51571 173 aa11.28□□□□□ -0.6
MSH6-210ENST00000540021 QRFPP83859 136 aa11.28□□□□□ -0.6
MSH6-210ENST00000540021 SPNS3Q6ZMD2 512 aa11.28□□□□□ -0.6
MSH6-210ENST00000540021 C5orf24Q7Z6I8 188 aa11.28□□□□□ -0.6
MSH6-210ENST00000540021 PSENENQ9NZ42 101 aa11.28□□□□□ -0.6
MSH6-210ENST00000540021 ERRFI1Q9UJM3 462 aaPredicted RBP11.28□□□□□ -0.6
MSH6-210ENST00000540021 RNF150Q9ULK6 438 aa11.28□□□□□ -0.6
MSH6-210ENST00000540021 MRPS17Q9Y2R5 130 aaKnown RBP11.28□□□□□ -0.6
MSH6-210ENST00000540021 ICE1Q9Y2F5 2266 aa11.28□□□□□ -0.6
MSH6-210ENST00000540021 GVINP1Q7Z2Y8 2422 aa11.28□□□□□ -0.6
MSH6-210ENST00000540021 C5orf49A4QMS7 147 aa11.28□□□□□ -0.6
MSH6-210ENST00000540021 PIAS2O75928 621 aa11.28□□□□□ -0.6
MSH6-210ENST00000540021 SERPINA7P05543 415 aa11.28□□□□□ -0.6
MSH6-210ENST00000540021 GLB1P16278 677 aa11.28□□□□□ -0.6
MSH6-210ENST00000540021 TMEM187Q14656 261 aa11.28□□□□□ -0.6
MSH6-210ENST00000540021 NINJ1Q92982 152 aa11.28□□□□□ -0.6
MSH6-210ENST00000540021 USP34Q70CQ2 3546 aa11.27□□□□□ -0.6
MSH6-210ENST00000540021 ZDBF2Q9HCK1 2354 aa11.27□□□□□ -0.6
MSH6-210ENST00000540021 GATCO43716 136 aaKnown RBP11.27□□□□□ -0.6
MSH6-210ENST00000540021 PRF1P14222 555 aa11.27□□□□□ -0.6
MSH6-210ENST00000540021 ZNF808Q8N4W9 903 aaPredicted RBP11.27□□□□□ -0.6
MSH6-210ENST00000540021 Q8WTZ3 238 aa11.27□□□□□ -0.6
MSH6-210ENST00000540021 OIT3Q8WWZ8 545 aa11.27□□□□□ -0.6
MSH6-210ENST00000540021 HINT2Q9BX68 163 aa11.27□□□□□ -0.6
MSH6-210ENST00000540021 DNAH14Q0VDD8 3507 aa11.27□□□□□ -0.61
MSH6-210ENST00000540021 GJE1A6NN92 205 aa11.27□□□□□ -0.61
MSH6-210ENST00000540021 IGHMP01871 453 aa11.27□□□□□ -0.61
MSH6-210ENST00000540021 TRGC1P0CF51 173 aa11.27□□□□□ -0.61
MSH6-210ENST00000540021 HOXB1P14653 301 aaPredicted RBP11.27□□□□□ -0.61
MSH6-210ENST00000540021 FOSL1P15407 271 aa11.27□□□□□ -0.61
MSH6-210ENST00000540021 RAB4BP61018 213 aa11.27□□□□□ -0.61
MSH6-210ENST00000540021 H3F3AP84243 136 aa11.27□□□□□ -0.61
MSH6-210ENST00000540021 SLC25A47Q6Q0C1 308 aa11.27□□□□□ -0.61
MSH6-210ENST00000540021 RPS19BP1Q86WX3 136 aaKnown RBP11.27□□□□□ -0.61
MSH6-210ENST00000540021 SLC39A7Q92504 469 aa11.27□□□□□ -0.61
MSH6-210ENST00000540021 WFIKKN1Q96NZ8 548 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms