RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 DEGS1O15121 323 aa11.99□□□□□ -0.49
USP28-204ENST00000537642 MMP23AO75900 390 aa11.99□□□□□ -0.49
USP28-204ENST00000537642 ARG1P05089 322 aa11.99□□□□□ -0.49
USP28-204ENST00000537642 IGFBP3P17936 291 aaPredicted RBP11.99□□□□□ -0.49
USP28-204ENST00000537642 OR3A4PP47883 348 aa11.99□□□□□ -0.49
USP28-204ENST00000537642 GLIPR1P48060 266 aa11.99□□□□□ -0.49
USP28-204ENST00000537642 PPP3R1P63098 170 aa11.99□□□□□ -0.49
USP28-204ENST00000537642 SRSF4Q08170 494 aaKnown RBP11.99□□□□□ -0.49
USP28-204ENST00000537642 AANATQ16613 207 aa11.99□□□□□ -0.49
USP28-204ENST00000537642 YIF1BQ5BJH7 314 aa11.99□□□□□ -0.49
USP28-204ENST00000537642 DDI2Q5TDH0 399 aa11.99□□□□□ -0.49
USP28-204ENST00000537642 ZNF626Q68DY1 528 aa11.99□□□□□ -0.49
USP28-204ENST00000537642 DHRS7BQ6IAN0 325 aaPredicted RBP11.99□□□□□ -0.49
USP28-204ENST00000537642 DYNAPQ8N1N2 210 aa11.99□□□□□ -0.49
USP28-204ENST00000537642 CHST4Q8NCG5 386 aa11.99□□□□□ -0.49
USP28-204ENST00000537642 Q8NFD4 153 aa11.99□□□□□ -0.49
USP28-204ENST00000537642 OR11H6Q8NGC7 330 aa11.99□□□□□ -0.49
USP28-204ENST00000537642 OR10K1Q8NGX5 313 aa11.99□□□□□ -0.49
USP28-204ENST00000537642 LINC01006Q8NI28 216 aa11.99□□□□□ -0.49
USP28-204ENST00000537642 COQ2Q96H96 371 aa11.99□□□□□ -0.49
USP28-204ENST00000537642 NR1H4Q96RI1 486 aaPredicted RBP11.99□□□□□ -0.49
USP28-204ENST00000537642 FAM192AQ9GZU8 254 aa11.99□□□□□ -0.49
USP28-204ENST00000537642 TMEM138Q9NPI0 162 aa11.99□□□□□ -0.49
USP28-204ENST00000537642 SESN1Q9Y6P5 492 aa11.99□□□□□ -0.49
USP28-204ENST00000537642 PNMA8CA0A1B0GUJ8 204 aa11.98□□□□□ -0.49
USP28-204ENST00000537642 FUOMA2VDF0 154 aa11.98□□□□□ -0.49
USP28-204ENST00000537642 GPX5O75715 221 aa11.98□□□□□ -0.49
USP28-204ENST00000537642 CLPXO76031 633 aa11.98□□□□□ -0.49
USP28-204ENST00000537642 CSN2P05814 226 aa11.98□□□□□ -0.49
USP28-204ENST00000537642 BDKRB2P30411 391 aa11.98□□□□□ -0.49
USP28-204ENST00000537642 TGFBR2P37173 567 aa11.98□□□□□ -0.49
USP28-204ENST00000537642 PTGFRP43088 359 aa11.98□□□□□ -0.49
USP28-204ENST00000537642 AQP4P55087 323 aa11.98□□□□□ -0.49
USP28-204ENST00000537642 WNT4P56705 351 aa11.98□□□□□ -0.49
USP28-204ENST00000537642 TAS2R43P59537 309 aa11.98□□□□□ -0.49
USP28-204ENST00000537642 RSU1Q15404 277 aa11.98□□□□□ -0.49
USP28-204ENST00000537642 LY6EQ16553 131 aa11.98□□□□□ -0.49
USP28-204ENST00000537642 Q499Y3 187 aa11.98□□□□□ -0.49
USP28-204ENST00000537642 TRAPPC6BQ86SZ2 158 aa11.98□□□□□ -0.49
USP28-204ENST00000537642 NANOGP1Q8N7R0 232 aa11.98□□□□□ -0.49
USP28-204ENST00000537642 OR51T1Q8NGJ9 327 aa11.98□□□□□ -0.49
USP28-204ENST00000537642 PIFOQ8TCI5 191 aa11.98□□□□□ -0.49
USP28-204ENST00000537642 CORO2AQ92828 525 aa11.98□□□□□ -0.49
USP28-204ENST00000537642 C16orf95Q9H693 158 aa11.98□□□□□ -0.49
USP28-204ENST00000537642 TBL2Q9Y4P3 447 aaKnown RBP11.98□□□□□ -0.49
USP28-204ENST00000537642 RNF114Q9Y508 228 aa11.98□□□□□ -0.49
USP28-204ENST00000537642 TRAV8-7A0A075B6U6 113 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 TRGV10A0A0A0MS01 117 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 TRBV5-7A0A0A0MS05 114 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 TRAV24A0A0B4J272 114 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 ODAMA1E959 279 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 MAGEA13PA6NCF6 341 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 H0YJX3 145 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 MYL12BO14950 172 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 TSPAN9O75954 239 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 CDRT1O95170 752 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 HTR3BO95264 441 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 CDK1P06493 297 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 ZNF93P35789 620 aaPredicted RBP11.97□□□□□ -0.49
USP28-204ENST00000537642 KRTAP10-3P60369 221 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 DYNC1I2Q13409 638 aaKnown RBP11.97□□□□□ -0.49
USP28-204ENST00000537642 RIPK1Q13546 671 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 IL13RA2Q14627 380 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 ATXN7L3Q14CW9 347 aaPredicted RBP11.97□□□□□ -0.49
USP28-204ENST00000537642 PIGYQ3MUY2 71 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 KRBOX4Q5JUW0 171 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 C6orf141Q5SZD1 244 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 PRAMEF5Q5TYX0 476 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 BAIAP2L2Q6UXY1 529 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 OR14A2Q96R54 314 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 PPIL3Q9H2H8 161 aaKnown RBP11.97□□□□□ -0.49
USP28-204ENST00000537642 TMEM133Q9H2Q1 129 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 ZNF696Q9H7X3 374 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 ING3Q9NXR8 418 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 IL36GQ9NZH8 169 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 ING4Q9UNL4 249 aa11.97□□□□□ -0.49
USP28-204ENST00000537642 IGHV2-26A0A0B4J1V2 119 aa11.96□□□□□ -0.49
USP28-204ENST00000537642 A0A1W2PPK0 400 aa11.96□□□□□ -0.49
USP28-204ENST00000537642 MEGF11A6BM72 1044 aa11.96□□□□□ -0.49
USP28-204ENST00000537642 ERICH4A6NGS2 130 aa11.96□□□□□ -0.49
USP28-204ENST00000537642 VGLL3A8MV65 326 aa11.96□□□□□ -0.49
USP28-204ENST00000537642 HSPB6O14558 160 aa11.96□□□□□ -0.49
USP28-204ENST00000537642 CD1AP06126 327 aa11.96□□□□□ -0.49
USP28-204ENST00000537642 CELP19835 753 aa11.96□□□□□ -0.49
USP28-204ENST00000537642 FSTP19883 344 aa11.96□□□□□ -0.49
USP28-204ENST00000537642 GDNFP39905 211 aa11.96□□□□□ -0.49
USP28-204ENST00000537642 PROK1P58294 105 aa11.96□□□□□ -0.49
USP28-204ENST00000537642 SSX2Q16385 188 aa11.96□□□□□ -0.49
USP28-204ENST00000537642 PLA1AQ53H76 456 aa11.96□□□□□ -0.49
USP28-204ENST00000537642 PAN3Q58A45 887 aaKnown RBP11.96□□□□□ -0.49
USP28-204ENST00000537642 PRR31Q5SQ13 230 aa11.96□□□□□ -0.49
USP28-204ENST00000537642 RNLSQ5VYX0 342 aa11.96□□□□□ -0.49
USP28-204ENST00000537642 SGCDQ92629 289 aa11.96□□□□□ -0.49
USP28-204ENST00000537642 FOXRED1Q96CU9 486 aaPredicted RBP11.96□□□□□ -0.49
USP28-204ENST00000537642 MALSU1Q96EH3 234 aa11.96□□□□□ -0.49
USP28-204ENST00000537642 ZNF184Q99676 751 aaPredicted RBP11.96□□□□□ -0.49
USP28-204ENST00000537642 CLEC7AQ9BXN2 247 aa11.96□□□□□ -0.49
USP28-204ENST00000537642 METTL9Q9H1A3 318 aa11.96□□□□□ -0.49
USP28-204ENST00000537642 GAL3ST2Q9H3Q3 398 aa11.96□□□□□ -0.49
USP28-204ENST00000537642 TAS2R3Q9NYW6 316 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms