RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 HOXA4Q00056 320 aaPredicted RBP9.44□□□□□ -0.9
CLIP1-209ENST00000537178 SRSF9Q13242 221 aaKnown RBP eCLIP9.44□□□□□ -0.9
CLIP1-209ENST00000537178 TMEM211Q6ICI0 200 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 ZNF547Q8IVP9 402 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 ANAPC16Q96DE5 110 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 RBM14Q96PK6 669 aaKnown RBP9.44□□□□□ -0.9
CLIP1-209ENST00000537178 RAB1BQ9H0U4 201 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 ESRP2Q9H6T0 727 aaKnown RBP9.44□□□□□ -0.9
CLIP1-209ENST00000537178 IGSF23A1L1A6 192 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 RBFOX3A6NFN3 312 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 CORTO00230 105 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 MBPP02686 304 aaPredicted RBP9.44□□□□□ -0.9
CLIP1-209ENST00000537178 OR5AC1P0C628 307 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 MRPS11P82912 194 aaKnown RBP9.44□□□□□ -0.9
CLIP1-209ENST00000537178 LRRC61Q9BV99 259 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 ZNF318Q5VUA4 2279 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 CTSDP07339 412 aaPredicted RBP9.44□□□□□ -0.9
CLIP1-209ENST00000537178 MNX1P50219 401 aaPredicted RBP9.44□□□□□ -0.9
CLIP1-209ENST00000537178 HLA-DRB5Q30154 266 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 HLA-BQ31612 363 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 Q6ZNB5 142 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 ZNF683Q8IZ20 524 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 OR5R1Q8NH85 324 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 TM4SF19Q96DZ7 209 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 PERPQ96FX8 193 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 PLA2G3Q9NZ20 509 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 CHD5Q8TDI0 1954 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 A6NDN8 102 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 HELTA6NFD8 242 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 SYNGR2O43760 224 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 ACTL6AO96019 429 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 ACER2Q5QJU3 275 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 ZNF770Q6IQ21 691 aaPredicted RBP9.43□□□□□ -0.9
CLIP1-209ENST00000537178 HSD17B13Q7Z5P4 300 aaPredicted RBP9.43□□□□□ -0.9
CLIP1-209ENST00000537178 MCHR2Q969V1 340 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 GNRHR2Q96P88 292 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 MAP1LC3CQ9BXW4 147 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 VN1R1Q9GZP7 353 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 TMEFF2Q9UIK5 374 aaPredicted RBP9.43□□□□□ -0.9
CLIP1-209ENST00000537178 PLXNA4Q9HCM2 1894 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 OR2W5A6NFC9 320 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 GNG7O60262 68 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 TMEM33P57088 247 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 CA5BP1Q8WTZ4 195 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 RAB24Q969Q5 203 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 CXXC4Q9H2H0 198 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 NUP205Q92621 2012 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 TRAV38-1A0A0B4J264 116 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 M0QZK8 103 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 CDK2AP1O14519 115 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 GGCTO75223 188 aaKnown RBP9.43□□□□□ -0.9
CLIP1-209ENST00000537178 P01737 135 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 ACP1P24666 158 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 TNXAQ16473 311 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 MRGPRDQ8TDS7 321 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 MSL2Q9HCI7 577 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 TMEM265A0A087WTH1 108 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 B4DEV8 164 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 SHISA8B8ZZ34 492 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 HPXP02790 462 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 COL8A1P27658 744 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 SRD5A2P31213 254 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 SKP2Q13309 424 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 RBPMS2Q6ZRY4 209 aaKnown RBP9.43□□□□□ -0.9
CLIP1-209ENST00000537178 OR5A2Q8NGI9 324 aa9.43□□□□□ -0.9
CLIP1-209ENST00000537178 INPP5JQ15735 1006 aaPredicted RBP9.42□□□□□ -0.9
CLIP1-209ENST00000537178 DEFB123Q8N688 67 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 RPS4Y2Q8TD47 263 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 MARVELD1Q9BSK0 173 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 GPR87Q9BY21 358 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 TMPRSS13Q9BYE2 586 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 GPR27Q9NS67 375 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 DOCK4Q8N1I0 1966 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 IGHV3-43A0A0B4J1X8 118 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 PPM1DO15297 605 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 IGHV3-43DP0DP04 118 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 VDAC1P21796 283 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 CRYBB2P43320 205 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 CST9Q5W186 159 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 SLC35E4Q6ICL7 350 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 OR1B1Q8NGR6 318 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 OR10D3Q8NH80 312 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 GABRG3Q99928 467 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 SLC26A1Q9H2B4 701 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 DNAJB12Q9NXW2 375 aaKnown RBP9.42□□□□□ -0.9
CLIP1-209ENST00000537178 PRSS50Q9UI38 385 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 EXOGQ9Y2C4 368 aaKnown RBP9.42□□□□□ -0.9
CLIP1-209ENST00000537178 P2RY1P47900 373 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 ZFP36L2P47974 494 aaKnown RBP9.42□□□□□ -0.9
CLIP1-209ENST00000537178 PGFP49763 221 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 MEOX2P50222 304 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 FOXC1Q12948 553 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 STXBP6Q8NFX7 210 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 OIT3Q8WWZ8 545 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 CA10Q9NS85 328 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 NEU3Q9UQ49 428 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 FAM157AC9JC47 383 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 ERVS71-1P61550 626 aa9.42□□□□□ -0.9
CLIP1-209ENST00000537178 POLR2GP62487 172 aaKnown RBP eCLIP9.42□□□□□ -0.9
CLIP1-209ENST00000537178 ZNF343Q6P1L6 599 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms