RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 MTNR1BP49286 362 aa12.36□□□□□ -0.43
CPSF1-208ENST00000532560 SRSF2Q01130 221 aaKnown RBP12.36□□□□□ -0.43
CPSF1-208ENST00000532560 KRTAP24-1Q3LI83 254 aa12.36□□□□□ -0.43
CPSF1-208ENST00000532560 ASCL4Q6XD76 172 aa12.36□□□□□ -0.43
CPSF1-208ENST00000532560 C17orf107Q6ZR85 190 aa12.36□□□□□ -0.43
CPSF1-208ENST00000532560 FAM185AQ8N0U4 392 aa12.36□□□□□ -0.43
CPSF1-208ENST00000532560 MS4A15Q8N5U1 240 aa12.36□□□□□ -0.43
CPSF1-208ENST00000532560 Q8N7P7 452 aa12.36□□□□□ -0.43
CPSF1-208ENST00000532560 OR5D13Q8NGL4 314 aa12.36□□□□□ -0.43
CPSF1-208ENST00000532560 UFD1Q92890 307 aa12.36□□□□□ -0.43
CPSF1-208ENST00000532560 SNX22Q96L94 193 aa12.36□□□□□ -0.43
CPSF1-208ENST00000532560 MGLLQ99685 303 aa12.36□□□□□ -0.43
CPSF1-208ENST00000532560 METTL8Q9H825 291 aaKnown RBP12.36□□□□□ -0.43
CPSF1-208ENST00000532560 EXOSC4Q9NPD3 245 aaKnown RBP12.36□□□□□ -0.43
CPSF1-208ENST00000532560 ISYNA1Q9NPH2 558 aa12.36□□□□□ -0.43
CPSF1-208ENST00000532560 DAPK2Q9UIK4 370 aa12.36□□□□□ -0.43
CPSF1-208ENST00000532560 A0A075B6Q4 140 aa12.35□□□□□ -0.43
CPSF1-208ENST00000532560 IGHV1-69DA0A0B4J2H0 117 aa12.35□□□□□ -0.43
CPSF1-208ENST00000532560 A0A1W2PPH5 198 aa12.35□□□□□ -0.43
CPSF1-208ENST00000532560 SH2D1BO14796 132 aa12.35□□□□□ -0.43
CPSF1-208ENST00000532560 RGS9O75916 674 aaPredicted RBP12.35□□□□□ -0.43
CPSF1-208ENST00000532560 VENTXO95231 258 aa12.35□□□□□ -0.43
CPSF1-208ENST00000532560 OR2H2O95918 312 aa12.35□□□□□ -0.43
CPSF1-208ENST00000532560 IGHV1-69P01742 117 aa12.35□□□□□ -0.43
CPSF1-208ENST00000532560 CALCBP10092 127 aa12.35□□□□□ -0.43
CPSF1-208ENST00000532560 DUSP1P28562 367 aa12.35□□□□□ -0.43
CPSF1-208ENST00000532560 PTGFRP43088 359 aa12.35□□□□□ -0.43
CPSF1-208ENST00000532560 OR3A4PP47883 348 aa12.35□□□□□ -0.43
CPSF1-208ENST00000532560 SNU13P55769 128 aaKnown RBP12.35□□□□□ -0.43
CPSF1-208ENST00000532560 LSM3P62310 102 aaKnown RBP12.35□□□□□ -0.43
CPSF1-208ENST00000532560 BRD3OSQ6XYD6 125 aa12.35□□□□□ -0.43
CPSF1-208ENST00000532560 GDPD3Q7L5L3 318 aa12.35□□□□□ -0.43
CPSF1-208ENST00000532560 BCL6BQ8N143 479 aaPredicted RBP12.35□□□□□ -0.43
CPSF1-208ENST00000532560 SIGLECL1Q8N7X8 197 aa12.35□□□□□ -0.43
CPSF1-208ENST00000532560 Q8NFD4 153 aa12.35□□□□□ -0.43
CPSF1-208ENST00000532560 LHX4Q969G2 390 aa12.35□□□□□ -0.43
CPSF1-208ENST00000532560 ZNF48Q96MX3 618 aaPredicted RBP12.35□□□□□ -0.43
CPSF1-208ENST00000532560 NOX4Q9NPH5 578 aa12.35□□□□□ -0.43
CPSF1-208ENST00000532560 RHBDL2Q9NX52 303 aa12.35□□□□□ -0.43
CPSF1-208ENST00000532560 IL36GQ9NZH8 169 aa12.35□□□□□ -0.43
CPSF1-208ENST00000532560 GSTK1Q9Y2Q3 226 aa12.35□□□□□ -0.43
CPSF1-208ENST00000532560 A0A1W2PPK0 400 aa12.34□□□□□ -0.43
CPSF1-208ENST00000532560 PIN1P1O15428 100 aa12.34□□□□□ -0.43
CPSF1-208ENST00000532560 PSPNO60542 156 aa12.34□□□□□ -0.43
CPSF1-208ENST00000532560 SC5DO75845 299 aa12.34□□□□□ -0.43
CPSF1-208ENST00000532560 GABRR1P24046 479 aa12.34□□□□□ -0.43
CPSF1-208ENST00000532560 LMO1P25800 156 aa12.34□□□□□ -0.43
CPSF1-208ENST00000532560 OR3A1P47881 315 aa12.34□□□□□ -0.43
CPSF1-208ENST00000532560 GUCA2AQ02747 115 aa12.34□□□□□ -0.43
CPSF1-208ENST00000532560 MLLT11Q13015 90 aaPredicted RBP12.34□□□□□ -0.43
CPSF1-208ENST00000532560 TPBGQ13641 420 aa12.34□□□□□ -0.43
CPSF1-208ENST00000532560 LIPKQ5VXJ0 399 aa12.34□□□□□ -0.43
CPSF1-208ENST00000532560 RUSC1-AS1Q66K80 236 aa12.34□□□□□ -0.43
CPSF1-208ENST00000532560 NCR3LG1Q68D85 454 aa12.34□□□□□ -0.43
CPSF1-208ENST00000532560 TMEM200BQ69YZ2 307 aa12.34□□□□□ -0.43
CPSF1-208ENST00000532560 UNQ9370/PRO34162Q6UXP9 181 aa12.34□□□□□ -0.43
CPSF1-208ENST00000532560 RBMS3Q6XE24 437 aaKnown RBP12.34□□□□□ -0.43
CPSF1-208ENST00000532560 CDH26Q8IXH8 852 aa12.34□□□□□ -0.43
CPSF1-208ENST00000532560 NKAIN3Q8N8D7 197 aa12.34□□□□□ -0.43
CPSF1-208ENST00000532560 CHST4Q8NCG5 386 aa12.34□□□□□ -0.43
CPSF1-208ENST00000532560 OR4M1Q8NGD0 313 aa12.34□□□□□ -0.43
CPSF1-208ENST00000532560 PPP1R35Q8TAP8 253 aa12.34□□□□□ -0.43
CPSF1-208ENST00000532560 TNFRSF14Q92956 283 aa12.34□□□□□ -0.43
CPSF1-208ENST00000532560 TMED9Q9BVK6 235 aa12.34□□□□□ -0.43
CPSF1-208ENST00000532560 SIRT7Q9NRC8 400 aa12.34□□□□□ -0.43
CPSF1-208ENST00000532560 SIRPB1O00241 398 aa12.33□□□□□ -0.44
CPSF1-208ENST00000532560 MGST3O14880 152 aa12.33□□□□□ -0.44
CPSF1-208ENST00000532560 UPK1BO75841 260 aa12.33□□□□□ -0.44
CPSF1-208ENST00000532560 PRTN3P24158 256 aa12.33□□□□□ -0.44
CPSF1-208ENST00000532560 PSMA1P25786 263 aaKnown RBP12.33□□□□□ -0.44
CPSF1-208ENST00000532560 EDDM3BP56851 147 aa12.33□□□□□ -0.44
CPSF1-208ENST00000532560 MEF2CQ06413 473 aaPredicted RBP12.33□□□□□ -0.44
CPSF1-208ENST00000532560 ZNF273Q14593 569 aa12.33□□□□□ -0.44
CPSF1-208ENST00000532560 IL13RA2Q14627 380 aa12.33□□□□□ -0.44
CPSF1-208ENST00000532560 RSU1Q15404 277 aa12.33□□□□□ -0.44
CPSF1-208ENST00000532560 GRK1Q15835 563 aa12.33□□□□□ -0.44
CPSF1-208ENST00000532560 ACSM3Q53FZ2 586 aa12.33□□□□□ -0.44
CPSF1-208ENST00000532560 Q6P435 159 aa12.33□□□□□ -0.44
CPSF1-208ENST00000532560 ZDHHC22Q8N966 263 aa12.33□□□□□ -0.44
CPSF1-208ENST00000532560 OR51T1Q8NGJ9 327 aa12.33□□□□□ -0.44
CPSF1-208ENST00000532560 NKX3-1Q99801 234 aaPredicted RBP12.33□□□□□ -0.44
CPSF1-208ENST00000532560 CHST6Q9GZX3 395 aa12.33□□□□□ -0.44
CPSF1-208ENST00000532560 METTL9Q9H1A3 318 aa12.33□□□□□ -0.44
CPSF1-208ENST00000532560 PRDM13Q9H4Q3 707 aa12.33□□□□□ -0.44
CPSF1-208ENST00000532560 ZMAT3Q9HA38 289 aaKnown RBP12.33□□□□□ -0.44
CPSF1-208ENST00000532560 ESM1Q9NQ30 184 aa12.33□□□□□ -0.44
CPSF1-208ENST00000532560 RNASEK-C17orf49H0YIS7 233 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 TRIM77I1YAP6 450 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 CDRT1O95170 752 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 RBP4P02753 201 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 MAS1P04201 325 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 CSN2P05814 226 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 HSMCR30P0CW71 290 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 ZNF44P15621 663 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 CPEP16870 476 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 ERP29P30040 261 aaKnown RBP12.32□□□□□ -0.44
CPSF1-208ENST00000532560 DLX6P56179 175 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 EDDM3AQ14507 147 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 INSL4Q14641 139 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 TRAM1Q15629 374 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms