RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 APH1AQ96BI3 265 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 SMARCD1Q96GM5 515 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 FANCEQ9HB96 536 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 ZC4H2Q9NQZ6 224 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 HEBP1Q9NRV9 189 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 TAS2R1Q9NYW7 299 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 HMGXB4Q9UGU5 601 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 RWDD2AQ9UIY3 292 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 CHTOPQ9Y3Y2 248 aaKnown RBP1.73□□□□□ -2.13
CD44-233ENST00000531141 CDK5RAP2Q96SN8 1893 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 SIP14410 1827 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 LRBAP50851 2863 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 LAMA1P25391 3075 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 SPG11Q96JI7 2443 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 NIPBLQ6KC79 2804 aaeCLIP1.72□□□□□ -2.13
CD44-233ENST00000531141 TET1Q8NFU7 2136 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 CENPEQ02224 2701 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 FLNCQ14315 2725 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 NBEAL1Q6ZS30 2694 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 COL4A1P02462 1669 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 IGHV6-1A0A0B4J1U7 121 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.72□□□□□ -2.13
CD44-233ENST00000531141 BOLA2-SMG1P6H3BVE0 249 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 M0QX08 132 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 SPOPO43791 374 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 UPK1BO75841 260 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 ANXA8P13928 327 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 RPS5P46782 204 aaKnown RBP1.72□□□□□ -2.13
CD44-233ENST00000531141 TRDNQ13061 729 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 ANXA8L1Q5VT79 327 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 NDUFAF7Q7L592 441 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 ADM2Q7Z4H4 148 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 RNF10Q8N5U6 811 aaKnown RBP1.72□□□□□ -2.13
CD44-233ENST00000531141 WDR31Q8NA23 367 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 LRRC75AQ8NAA5 344 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 FAM184AQ8NB25 1140 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 RXFP2Q8WXD0 754 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 SNF8Q96H20 258 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 STMN4Q9H169 189 aaPredicted RBP1.72□□□□□ -2.13
CD44-233ENST00000531141 REEP1Q9H902 201 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 CRLF2Q9HC73 371 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 DDX18Q9NVP1 670 aaKnown RBP1.72□□□□□ -2.13
CD44-233ENST00000531141 AHSPQ9NZD4 102 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 ZNF230Q9UIE0 474 aaPredicted RBP1.72□□□□□ -2.13
CD44-233ENST00000531141 PSME2Q9UL46 239 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 OR51B2Q9Y5P1 312 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 SDK1Q7Z5N4 2213 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 PTPRFP10586 1907 aa1.72□□□□□ -2.13
CD44-233ENST00000531141 COL6A6A6NMZ7 2263 aa1.71□□□□□ -2.13
CD44-233ENST00000531141 AHCTF1Q8WYP5 2266 aa1.71□□□□□ -2.13
CD44-233ENST00000531141 ARAP2Q8WZ64 1704 aa1.71□□□□□ -2.13
CD44-233ENST00000531141 ABCA2Q9BZC7 2435 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 ADGRA3Q8IWK6 1321 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 ATMQ13315 3056 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 TLN1Q9Y490 2541 aaKnown RBP1.71□□□□□ -2.14
CD44-233ENST00000531141 MGAQ8IWI9 3026 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 THADAQ6YHU6 1953 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 ARPC4-TTLL3A0A0A6YYG9 625 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 SERTM2A0A1B0GWG4 89 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 ERICH4A6NGS2 130 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 PCNX2A6NKB5 2137 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 C5orf67F2Z3F1 127 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 LINC01619G3V211 115 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 GOLGA8TH3BQL2 631 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 MYL12BO14950 172 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 HSBP1O75506 76 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 CTAG2O75638 210 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 FARS2O95363 451 aaKnown RBP1.71□□□□□ -2.14
CD44-233ENST00000531141 CATP04040 527 aaKnown RBP1.71□□□□□ -2.14
CD44-233ENST00000531141 FGF4P08620 206 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 HOXB8P17481 243 aaPredicted RBP1.71□□□□□ -2.14
CD44-233ENST00000531141 GPR1P46091 355 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 TAS2R39P59534 338 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 IRF8Q02556 426 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 INCA1Q0VD86 236 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 IHHQ14623 411 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 MAPRE2Q15555 327 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 C5orf64Q2M2E5 130 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 TMEM69Q5SWH9 247 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 ZNF678Q5SXM1 525 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 KDM4DQ6B0I6 523 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 MORN3Q6PF18 240 aaPredicted RBP1.71□□□□□ -2.14
CD44-233ENST00000531141 FAM131AQ6UXB0 335 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 BBOF1Q8ND07 529 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 MNS1Q8NEH6 495 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 AGR3Q8TD06 166 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 CA5BP1Q8WTZ4 195 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 HGDQ93099 445 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 YIPF5Q969M3 257 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 TOP1MTQ969P6 601 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 ALS2CR12Q96Q35 445 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 PDCD1LG2Q9BQ51 273 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 TBL1XR1Q9BZK7 514 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 TRIM45Q9H8W5 580 aaPredicted RBP1.71□□□□□ -2.14
CD44-233ENST00000531141 PXMP2Q9NR77 195 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 CFAP45Q9UL16 551 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 RAB22AQ9UL26 194 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 LOC285556D6RIA3 1793 aa1.71□□□□□ -2.14
CD44-233ENST00000531141 USP9YO00507 2555 aaPredicted RBP1.7□□□□□ -2.14
CD44-233ENST00000531141 WDR19Q8NEZ3 1342 aa1.7□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms