RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 PDGFAP04085 211 aa12.59□□□□□ -0.39
ECHDC1-220ENST00000528402 AP2S1P53680 142 aaPredicted RBP12.59□□□□□ -0.39
ECHDC1-220ENST00000528402 FOXC1Q12948 553 aa12.59□□□□□ -0.39
ECHDC1-220ENST00000528402 ESCO2Q56NI9 601 aa12.59□□□□□ -0.39
ECHDC1-220ENST00000528402 ZNF324BQ6AW86 544 aaPredicted RBP12.59□□□□□ -0.39
ECHDC1-220ENST00000528402 BRICD5Q6PL45 260 aa12.59□□□□□ -0.39
ECHDC1-220ENST00000528402 MOB1BQ7L9L4 216 aa12.59□□□□□ -0.39
ECHDC1-220ENST00000528402 SSX8Q7RTT4 187 aa12.59□□□□□ -0.39
ECHDC1-220ENST00000528402 LRTM2Q8N967 370 aa12.59□□□□□ -0.39
ECHDC1-220ENST00000528402 SUMF2Q8NBJ7 301 aa12.59□□□□□ -0.39
ECHDC1-220ENST00000528402 SCCPDHQ8NBX0 429 aa12.59□□□□□ -0.39
ECHDC1-220ENST00000528402 NEK7Q8TDX7 302 aa12.59□□□□□ -0.39
ECHDC1-220ENST00000528402 RSRP1Q9BUV0 290 aa12.59□□□□□ -0.39
ECHDC1-220ENST00000528402 OPN3Q9H1Y3 402 aaPredicted RBP12.59□□□□□ -0.39
ECHDC1-220ENST00000528402 PIGMQ9H3S5 423 aa12.59□□□□□ -0.39
ECHDC1-220ENST00000528402 NAA60Q9H7X0 242 aa12.59□□□□□ -0.39
ECHDC1-220ENST00000528402 ZFP57Q9NU63 452 aa12.59□□□□□ -0.39
ECHDC1-220ENST00000528402 ZNF581Q9P0T4 197 aa12.59□□□□□ -0.39
ECHDC1-220ENST00000528402 PCDHB10Q9UN67 800 aa12.59□□□□□ -0.39
ECHDC1-220ENST00000528402 WASF3Q9UPY6 502 aa12.59□□□□□ -0.39
ECHDC1-220ENST00000528402 SLC25A15Q9Y619 301 aa12.59□□□□□ -0.39
ECHDC1-220ENST00000528402 CFAP54Q96N23 3096 aa12.58□□□□□ -0.4
ECHDC1-220ENST00000528402 KANTRA0A1W2PQU2 76 aa12.58□□□□□ -0.4
ECHDC1-220ENST00000528402 F8VVB4 439 aa12.58□□□□□ -0.4
ECHDC1-220ENST00000528402 F8VWA3 439 aa12.58□□□□□ -0.4
ECHDC1-220ENST00000528402 CCSO14618 274 aa12.58□□□□□ -0.4
ECHDC1-220ENST00000528402 SH2D1BO14796 132 aa12.58□□□□□ -0.4
ECHDC1-220ENST00000528402 LILRA1O75019 489 aa12.58□□□□□ -0.4
ECHDC1-220ENST00000528402 CECR9P0C854 216 aa12.58□□□□□ -0.4
ECHDC1-220ENST00000528402 PGA5P0DJD9 388 aa12.58□□□□□ -0.4
ECHDC1-220ENST00000528402 LYL1P12980 280 aa12.58□□□□□ -0.4
ECHDC1-220ENST00000528402 PI3P19957 117 aa12.58□□□□□ -0.4
ECHDC1-220ENST00000528402 NUP62P37198 522 aaPredicted RBP12.58□□□□□ -0.4
ECHDC1-220ENST00000528402 PIGPP57054 158 aa12.58□□□□□ -0.4
ECHDC1-220ENST00000528402 UBA52P62987 128 aaKnown RBP12.58□□□□□ -0.4
ECHDC1-220ENST00000528402 SRPXP78539 464 aa12.58□□□□□ -0.4
ECHDC1-220ENST00000528402 ZNF146Q15072 292 aa12.58□□□□□ -0.4
ECHDC1-220ENST00000528402 PDCD1Q15116 288 aa12.58□□□□□ -0.4
ECHDC1-220ENST00000528402 ANKRD55Q3KP44 614 aa12.58□□□□□ -0.4
ECHDC1-220ENST00000528402 ZNF880Q6PDB4 577 aa12.58□□□□□ -0.4
ECHDC1-220ENST00000528402 MYPOPQ86VE0 399 aaPredicted RBP12.58□□□□□ -0.4
ECHDC1-220ENST00000528402 SCARB1Q8WTV0 552 aa12.58□□□□□ -0.4
ECHDC1-220ENST00000528402 CCDC120Q96HB5 630 aa12.58□□□□□ -0.4
ECHDC1-220ENST00000528402 FAM215AQ9Y5M1 114 aa12.58□□□□□ -0.4
ECHDC1-220ENST00000528402 ZNF292O60281 2723 aa12.58□□□□□ -0.4
ECHDC1-220ENST00000528402 INTS1Q8N201 2190 aaKnown RBP12.57□□□□□ -0.4
ECHDC1-220ENST00000528402 URB1O60287 2271 aaKnown RBP12.57□□□□□ -0.4
ECHDC1-220ENST00000528402 A0A1B0GWJ7 208 aa12.57□□□□□ -0.4
ECHDC1-220ENST00000528402 ZNHIT1O43257 154 aa12.57□□□□□ -0.4
ECHDC1-220ENST00000528402 AGFG2O95081 481 aa12.57□□□□□ -0.4
ECHDC1-220ENST00000528402 PPYP01298 95 aa12.57□□□□□ -0.4
ECHDC1-220ENST00000528402 RND3P61587 244 aa12.57□□□□□ -0.4
ECHDC1-220ENST00000528402 TSC22D1Q15714 1073 aa12.57□□□□□ -0.4
ECHDC1-220ENST00000528402 Q6P435 159 aa12.57□□□□□ -0.4
ECHDC1-220ENST00000528402 OR4A4PQ8NGN8 299 aa12.57□□□□□ -0.4
ECHDC1-220ENST00000528402 RTN4IP1Q8WWV3 396 aaPredicted RBP12.57□□□□□ -0.4
ECHDC1-220ENST00000528402 DYRK2Q92630 601 aa12.57□□□□□ -0.4
ECHDC1-220ENST00000528402 MUCL1Q96DR8 90 aa12.57□□□□□ -0.4
ECHDC1-220ENST00000528402 CYYR1Q96J86 154 aa12.57□□□□□ -0.4
ECHDC1-220ENST00000528402 NRIP2Q9BQI9 281 aa12.57□□□□□ -0.4
ECHDC1-220ENST00000528402 DNAJB11Q9UBS4 358 aa12.57□□□□□ -0.4
ECHDC1-220ENST00000528402 MSRB2Q9Y3D2 182 aa12.57□□□□□ -0.4
ECHDC1-220ENST00000528402 AUP1Q9Y679 476 aa12.57□□□□□ -0.4
ECHDC1-220ENST00000528402 IGHV2OR16-5A0A0B4J2B6 119 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 IGHV1-18A0A0C4DH31 117 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 A0A1B0GW55 424 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 FAM221AA4D161 298 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 K7ENP7 123 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 PRRG2O14669 202 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 DUX4L2P0CJ85 424 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 DUX4L3P0CJ86 424 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 DUX4L4P0CJ87 422 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 DUX4L5P0CJ88 424 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 DUX4L6P0CJ89 424 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 DUX4L7P0CJ90 424 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 S100GP29377 79 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 ZNF154Q13106 437 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 IL15RAQ13261 267 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 PRSS54Q6PEW0 395 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 SPACA3Q8IXA5 215 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 LGI3Q8N145 548 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 POC1AQ8NBT0 407 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 PHYHIPLQ96FC7 376 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 ABHD17AQ96GS6 310 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 TLNRD1Q9H1K6 362 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 RASL12Q9NYN1 266 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 RDH8Q9NYR8 311 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 DUX4Q9UBX2 424 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 FBXO9Q9UK97 447 aaPredicted RBP12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 ESPL1Q14674 2120 aa12.56□□□□□ -0.4
ECHDC1-220ENST00000528402 TRAV24A0A0B4J272 114 aa12.55□□□□□ -0.4
ECHDC1-220ENST00000528402 ANKRD34BA5PLL1 514 aa12.55□□□□□ -0.4
ECHDC1-220ENST00000528402 BCL2L11O43521 198 aa12.55□□□□□ -0.4
ECHDC1-220ENST00000528402 TIMM8AO60220 97 aaPredicted RBP12.55□□□□□ -0.4
ECHDC1-220ENST00000528402 RHBDL1O75783 438 aa12.55□□□□□ -0.4
ECHDC1-220ENST00000528402 RLN2P04090 185 aa12.55□□□□□ -0.4
ECHDC1-220ENST00000528402 ZNF44P15621 663 aa12.55□□□□□ -0.4
ECHDC1-220ENST00000528402 AADACP22760 399 aa12.55□□□□□ -0.4
ECHDC1-220ENST00000528402 ERVS71-1P61550 626 aa12.55□□□□□ -0.4
ECHDC1-220ENST00000528402 ZNF565Q8N9K5 539 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms