RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 IFNL4K9M1U5 179 aa17.68■□□□□ 0.42
VPS28-208ENST00000527797 PMP2P02689 132 aa17.68■□□□□ 0.42
VPS28-208ENST00000527797 AMY2AP04746 511 aa17.68■□□□□ 0.42
VPS28-208ENST00000527797 LMO1P25800 156 aa17.68■□□□□ 0.42
VPS28-208ENST00000527797 RBMXP38159 391 aaKnown RBP17.68■□□□□ 0.42
VPS28-208ENST00000527797 TAS2R46P59540 309 aa17.68■□□□□ 0.42
VPS28-208ENST00000527797 OR51S1Q8NGJ8 323 aa17.68■□□□□ 0.42
VPS28-208ENST00000527797 FBXO9Q9UK97 447 aaPredicted RBP17.68■□□□□ 0.42
VPS28-208ENST00000527797 IFNA6P05013 189 aa17.67■□□□□ 0.42
VPS28-208ENST00000527797 MDH2P40926 338 aaKnown RBP17.67■□□□□ 0.42
VPS28-208ENST00000527797 CEBPDP49716 269 aaPredicted RBP17.67■□□□□ 0.42
VPS28-208ENST00000527797 MICBQ29980 383 aa17.67■□□□□ 0.42
VPS28-208ENST00000527797 CHRFAM7AQ494W8 412 aa17.67■□□□□ 0.42
VPS28-208ENST00000527797 AGAP6Q5VW22 663 aa17.67■□□□□ 0.42
VPS28-208ENST00000527797 OR5H2Q8NGV7 314 aa17.67■□□□□ 0.42
VPS28-208ENST00000527797 UPRTQ96BW1 309 aa17.67■□□□□ 0.42
VPS28-208ENST00000527797 MARVELD1Q9BSK0 173 aa17.67■□□□□ 0.42
VPS28-208ENST00000527797 SEBOXQ9HB31 216 aaPredicted RBP17.67■□□□□ 0.42
VPS28-208ENST00000527797 CBLN4Q9NTU7 201 aa17.67■□□□□ 0.42
VPS28-208ENST00000527797 TREM2Q9NZC2 230 aa17.67■□□□□ 0.42
VPS28-208ENST00000527797 ANKHD1Q8IWZ3 2542 aaKnown RBP17.67■□□□□ 0.42
VPS28-208ENST00000527797 PLCE1Q9P212 2302 aa17.66■□□□□ 0.42
VPS28-208ENST00000527797 A6NNC1 897 aa17.66■□□□□ 0.42
VPS28-208ENST00000527797 CYB5R3P00387 301 aaPredicted RBP17.66■□□□□ 0.42
VPS28-208ENST00000527797 CSN2P05814 226 aa17.66■□□□□ 0.42
VPS28-208ENST00000527797 RNF224P0DH78 156 aa17.66■□□□□ 0.42
VPS28-208ENST00000527797 OR3A3P47888 321 aa17.66■□□□□ 0.42
VPS28-208ENST00000527797 PPOXP50336 477 aa17.66■□□□□ 0.42
VPS28-208ENST00000527797 SHEQ5VZ18 495 aa17.66■□□□□ 0.42
VPS28-208ENST00000527797 BTN2A1Q7KYR7 527 aa17.66■□□□□ 0.42
VPS28-208ENST00000527797 OR5AP2Q8NGF4 316 aa17.66■□□□□ 0.42
VPS28-208ENST00000527797 OR5T2Q8NGG2 359 aa17.66■□□□□ 0.42
VPS28-208ENST00000527797 NUDT15Q9NV35 164 aa17.66■□□□□ 0.42
VPS28-208ENST00000527797 SCP2D1Q9UJQ7 156 aa17.66■□□□□ 0.42
VPS28-208ENST00000527797 ZFYVE26Q68DK2 2539 aa17.65■□□□□ 0.42
VPS28-208ENST00000527797 OR2AT4A6NND4 320 aa17.65■□□□□ 0.42
VPS28-208ENST00000527797 INMT-MINDY4F8WBC2 141 aa17.65■□□□□ 0.42
VPS28-208ENST00000527797 NAPSAO96009 420 aa17.65■□□□□ 0.42
VPS28-208ENST00000527797 ZNF735P0CB33 412 aa17.65■□□□□ 0.42
VPS28-208ENST00000527797 PSG2P11465 335 aa17.65■□□□□ 0.42
VPS28-208ENST00000527797 PRDX2P32119 198 aa17.65■□□□□ 0.42
VPS28-208ENST00000527797 VAX1Q5SQQ9 334 aa17.65■□□□□ 0.42
VPS28-208ENST00000527797 SLC6A7Q99884 636 aa17.65■□□□□ 0.42
VPS28-208ENST00000527797 VRK1Q99986 396 aaPredicted RBP17.65■□□□□ 0.42
VPS28-208ENST00000527797 ZNF286AQ9HBT8 521 aa17.65■□□□□ 0.42
VPS28-208ENST00000527797 ANXA10Q9UJ72 324 aa17.65■□□□□ 0.42
VPS28-208ENST00000527797 IGHV3OR15-7A0A075B7D8 119 aa17.65■□□□□ 0.42
VPS28-208ENST00000527797 IGKV1D-8A0A087WSZ0 117 aa17.65■□□□□ 0.42
VPS28-208ENST00000527797 H7C1Q1 480 aa17.65■□□□□ 0.42
VPS28-208ENST00000527797 NDUFB6O95139 128 aa17.65■□□□□ 0.42
VPS28-208ENST00000527797 GOSR1O95249 250 aa17.65■□□□□ 0.42
VPS28-208ENST00000527797 CD80P33681 288 aa17.65■□□□□ 0.42
VPS28-208ENST00000527797 ARPC4P59998 168 aa17.65■□□□□ 0.42
VPS28-208ENST00000527797 COL10A1Q03692 680 aa17.65■□□□□ 0.42
VPS28-208ENST00000527797 SRSF7Q16629 238 aaKnown RBP eCLIP17.65■□□□□ 0.42
VPS28-208ENST00000527797 C1orf87Q8N0U7 546 aa17.65■□□□□ 0.42
VPS28-208ENST00000527797 CD177Q8N6Q3 437 aa17.65■□□□□ 0.42
VPS28-208ENST00000527797 PRRT1Q99946 306 aa17.65■□□□□ 0.42
VPS28-208ENST00000527797 PPA2Q9H2U2 334 aa17.65■□□□□ 0.42
VPS28-208ENST00000527797 TMEM165Q9HC07 324 aa17.65■□□□□ 0.42
VPS28-208ENST00000527797 TRAV6A0A075B6T7 132 aa17.64■□□□□ 0.41
VPS28-208ENST00000527797 PSPNO60542 156 aa17.64■□□□□ 0.41
VPS28-208ENST00000527797 ZMYND11Q15326 602 aa17.64■□□□□ 0.41
VPS28-208ENST00000527797 RBMS2Q15434 407 aaKnown RBP17.64■□□□□ 0.41
VPS28-208ENST00000527797 SCGB2B2Q4G0G5 96 aa17.64■□□□□ 0.41
VPS28-208ENST00000527797 FAM201AQ5SY85 155 aa17.64■□□□□ 0.41
VPS28-208ENST00000527797 Q9N2K0 584 aa17.64■□□□□ 0.41
VPS28-208ENST00000527797 IGKV1D-17A0A075B6S4 117 aa17.63■□□□□ 0.41
VPS28-208ENST00000527797 TRBV6-6A0A0A6YYG2 114 aa17.63■□□□□ 0.41
VPS28-208ENST00000527797 POM121CA8CG34 1229 aa17.63■□□□□ 0.41
VPS28-208ENST00000527797 H2AFB2P0C5Z0 115 aa17.63■□□□□ 0.41
VPS28-208ENST00000527797 GABRA2P47869 451 aa17.63■□□□□ 0.41
VPS28-208ENST00000527797 BTG1P62324 171 aa17.63■□□□□ 0.41
VPS28-208ENST00000527797 CDK10Q15131 360 aa17.63■□□□□ 0.41
VPS28-208ENST00000527797 IDO2Q6ZQW0 420 aa17.63■□□□□ 0.41
VPS28-208ENST00000527797 TGIF2LYQ8IUE0 185 aa17.63■□□□□ 0.41
VPS28-208ENST00000527797 ARRDC1Q8N5I2 433 aa17.63■□□□□ 0.41
VPS28-208ENST00000527797 PLPPR1Q8TBJ4 325 aa17.63■□□□□ 0.41
VPS28-208ENST00000527797 MRPL30Q8TCC3 161 aaKnown RBP17.63■□□□□ 0.41
VPS28-208ENST00000527797 GINS4Q9BRT9 223 aa17.63■□□□□ 0.41
VPS28-208ENST00000527797 C20orf85Q9H1P6 137 aa17.63■□□□□ 0.41
VPS28-208ENST00000527797 SLC2A8Q9NY64 477 aa17.63■□□□□ 0.41
VPS28-208ENST00000527797 RELNP78509 3460 aa17.63■□□□□ 0.41
VPS28-208ENST00000527797 FUOMA2VDF0 154 aa17.62■□□□□ 0.41
VPS28-208ENST00000527797 DHFRP00374 187 aa17.62■□□□□ 0.41
VPS28-208ENST00000527797 CD8AP01732 235 aa17.62■□□□□ 0.41
VPS28-208ENST00000527797 TFF1P04155 84 aa17.62■□□□□ 0.41
VPS28-208ENST00000527797 MUC1P15941 1255 aaPredicted RBP17.62■□□□□ 0.41
VPS28-208ENST00000527797 KCNJ3P48549 501 aa17.62■□□□□ 0.41
VPS28-208ENST00000527797 BCAP31P51572 246 aa17.62■□□□□ 0.41
VPS28-208ENST00000527797 RAB25P57735 213 aa17.62■□□□□ 0.41
VPS28-208ENST00000527797 TSPAN5P62079 268 aa17.62■□□□□ 0.41
VPS28-208ENST00000527797 ATXN7L3Q14CW9 347 aaPredicted RBP17.62■□□□□ 0.41
VPS28-208ENST00000527797 Q6ZPA2 131 aa17.62■□□□□ 0.41
VPS28-208ENST00000527797 Q6ZS49 121 aa17.62■□□□□ 0.41
VPS28-208ENST00000527797 TMEM17Q86X19 198 aa17.62■□□□□ 0.41
VPS28-208ENST00000527797 CCL17Q92583 94 aa17.62■□□□□ 0.41
VPS28-208ENST00000527797 TMEM106BQ9NUM4 274 aa17.62■□□□□ 0.41
VPS28-208ENST00000527797 EHFQ9NZC4 300 aa17.62■□□□□ 0.41
VPS28-208ENST00000527797 IGHV1-69-2A0A0G2JMI3 117 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms