RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 RANBP1P43487 201 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 GABRA2P47869 451 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 VEGFCP49767 419 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 COL10A1Q03692 680 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 KRTAP1-1Q07627 177 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 ESCO2Q56NI9 601 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 PLAC9Q5JTB6 97 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 ATPAF1Q5TC12 328 aaPredicted RBP12.73□□□□□ -0.37
LSM1-203ENST00000520755 MZT2AQ6P582 158 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 FIP1L1Q6UN15 594 aaKnown RBP12.73□□□□□ -0.37
LSM1-203ENST00000520755 CLEC9AQ6UXN8 241 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 FGFRL1Q8N441 504 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 LINC01356Q8N9X3 169 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 SDSLQ96GA7 329 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 URM1Q9BTM9 101 aaKnown RBP12.73□□□□□ -0.37
LSM1-203ENST00000520755 MMP27Q9H306 513 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 GSX1Q9H4S2 264 aaPredicted RBP12.73□□□□□ -0.37
LSM1-203ENST00000520755 SEBOXQ9HB31 216 aaPredicted RBP12.73□□□□□ -0.37
LSM1-203ENST00000520755 MAB21L2Q9Y586 359 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 F8P00451 2351 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 ARHGAP32A7KAX9 2087 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 B4DSR2 109 aa12.72□□□□□ -0.37
LSM1-203ENST00000520755 PHF1O43189 567 aaPredicted RBP12.72□□□□□ -0.37
LSM1-203ENST00000520755 CLPXO76031 633 aa12.72□□□□□ -0.37
LSM1-203ENST00000520755 TGFAP01135 160 aa12.72□□□□□ -0.37
LSM1-203ENST00000520755 APOA1P02647 267 aa12.72□□□□□ -0.37
LSM1-203ENST00000520755 LMO1P25800 156 aa12.72□□□□□ -0.37
LSM1-203ENST00000520755 PRDX2P32119 198 aa12.72□□□□□ -0.37
LSM1-203ENST00000520755 PITPNBP48739 271 aa12.72□□□□□ -0.37
LSM1-203ENST00000520755 TMEM50BP56557 158 aa12.72□□□□□ -0.37
LSM1-203ENST00000520755 GNB2P62879 340 aa12.72□□□□□ -0.37
LSM1-203ENST00000520755 LCN2P80188 198 aa12.72□□□□□ -0.37
LSM1-203ENST00000520755 C17orf107Q6ZR85 190 aa12.72□□□□□ -0.37
LSM1-203ENST00000520755 SLC36A1Q7Z2H8 476 aa12.72□□□□□ -0.37
LSM1-203ENST00000520755 DTX3Q8N9I9 347 aa12.72□□□□□ -0.37
LSM1-203ENST00000520755 OR4M1Q8NGD0 313 aa12.72□□□□□ -0.37
LSM1-203ENST00000520755 OR6Q1Q8NGQ2 317 aa12.72□□□□□ -0.37
LSM1-203ENST00000520755 C1orf159Q96HA4 380 aa12.72□□□□□ -0.37
LSM1-203ENST00000520755 CMTM3Q96MX0 182 aa12.72□□□□□ -0.37
LSM1-203ENST00000520755 WDFY2Q96P53 400 aa12.72□□□□□ -0.37
LSM1-203ENST00000520755 SSBP3Q9BWW4 388 aaPredicted RBP12.72□□□□□ -0.37
LSM1-203ENST00000520755 ATG5Q9H1Y0 275 aa12.72□□□□□ -0.37
LSM1-203ENST00000520755 MALRD1Q5VYJ5 2156 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 ABCA1O95477 2261 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 MFNGO00587 321 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 SIGLEC5O15389 551 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 RGS5O15539 181 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 CD5LO43866 347 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 PDCD6O75340 191 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 MSMBP08118 114 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 ZNF44P15621 663 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 CDK2P24941 298 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 OR3A1P47881 315 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 SCN1BQ07699 218 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 OLFML2AQ68BL7 652 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 Q71RC1 249 aaPredicted RBP12.71□□□□□ -0.37
LSM1-203ENST00000520755 IZUMO1Q8IYV9 350 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 ZNRF1Q8ND25 227 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 OR4S1Q8NGB4 309 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 OR56B1Q8NGI3 324 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 OR10R2Q8NGX6 335 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 RAB40AQ8WXH6 277 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 POM121Q96HA1 1249 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 ARHGAP5-AS1Q96IT6 56 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 SHARPINQ9H0F6 387 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 DNTTIP1Q9H147 329 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 KAAG1Q9UBP8 84 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 CLN8Q9UBY8 286 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 KCNK7Q9Y2U2 307 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 ZANQ9Y493 2812 aa12.71□□□□□ -0.37
LSM1-203ENST00000520755 KIAA2026Q5HYC2 2103 aa12.7□□□□□ -0.38
LSM1-203ENST00000520755 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.7□□□□□ -0.382e-10■■■■□ 21.5
LSM1-203ENST00000520755 HSPB6O14558 160 aa12.7□□□□□ -0.38
LSM1-203ENST00000520755 DVL1O14640 695 aa12.7□□□□□ -0.38
LSM1-203ENST00000520755 SH2D1BO14796 132 aa12.7□□□□□ -0.38
LSM1-203ENST00000520755 DEGS1O15121 323 aa12.7□□□□□ -0.38
LSM1-203ENST00000520755 NDUFB3O43676 98 aa12.7□□□□□ -0.38
LSM1-203ENST00000520755 FOXH1O75593 365 aa12.7□□□□□ -0.38
LSM1-203ENST00000520755 ZFP36P26651 326 aaKnown RBP12.7□□□□□ -0.38
LSM1-203ENST00000520755 BLVRBP30043 206 aaPredicted RBP12.7□□□□□ -0.38
LSM1-203ENST00000520755 IL13RA1P78552 427 aa12.7□□□□□ -0.38
LSM1-203ENST00000520755 MADCAM1Q13477 382 aa12.7□□□□□ -0.38
LSM1-203ENST00000520755 NKAPLQ5M9Q1 402 aa12.7□□□□□ -0.38
LSM1-203ENST00000520755 WDR25Q64LD2 544 aaPredicted RBP12.7□□□□□ -0.38
LSM1-203ENST00000520755 RAB12Q6IQ22 244 aa12.7□□□□□ -0.38
LSM1-203ENST00000520755 CNIH2Q6PI25 160 aa12.7□□□□□ -0.38
LSM1-203ENST00000520755 BRICD5Q6PL45 260 aa12.7□□□□□ -0.38
LSM1-203ENST00000520755 ZNF841Q6ZN19 808 aa12.7□□□□□ -0.38
LSM1-203ENST00000520755 C6orf201Q7Z4U5 140 aa12.7□□□□□ -0.38
LSM1-203ENST00000520755 ZNF561Q8N587 486 aa12.7□□□□□ -0.38
LSM1-203ENST00000520755 SUMF2Q8NBJ7 301 aa12.7□□□□□ -0.38
LSM1-203ENST00000520755 CHST4Q8NCG5 386 aa12.7□□□□□ -0.38
LSM1-203ENST00000520755 ST8SIA4Q92187 359 aa12.7□□□□□ -0.38
LSM1-203ENST00000520755 DYRK2Q92630 601 aa12.7□□□□□ -0.38
LSM1-203ENST00000520755 SULT4A1Q9BR01 284 aa12.7□□□□□ -0.38
LSM1-203ENST00000520755 NUDT16L1Q9BRJ7 211 aaKnown RBP12.7□□□□□ -0.38
LSM1-203ENST00000520755 PECRQ9BY49 303 aa12.7□□□□□ -0.38
LSM1-203ENST00000520755 CHST6Q9GZX3 395 aa12.7□□□□□ -0.38
LSM1-203ENST00000520755 PPA2Q9H2U2 334 aa12.7□□□□□ -0.38
LSM1-203ENST00000520755 YAE1D1Q9NRH1 226 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms