RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 EIF3GO75821 320 aaKnown RBP eCLIP10.26□□□□□ -0.77
SYNPO-204ENST00000519664 LTBRP36941 435 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 LSM6P62312 80 aaKnown RBP10.26□□□□□ -0.77
SYNPO-204ENST00000519664 ZNF718Q3SXZ3 478 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 ARSJQ5FYB0 599 aaPredicted RBP10.26□□□□□ -0.77
SYNPO-204ENST00000519664 MS4A3Q96HJ5 214 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 GPX7Q96SL4 187 aaPredicted RBP10.26□□□□□ -0.77
SYNPO-204ENST00000519664 RIMS4Q9H426 269 aaPredicted RBP10.26□□□□□ -0.77
SYNPO-204ENST00000519664 NAA60Q9H7X0 242 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 UQCC1Q9NVA1 299 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 OSGIN2Q9Y236 505 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 ZFHX2Q9C0A1 2572 aaPredicted RBP10.26□□□□□ -0.77
SYNPO-204ENST00000519664 C3orf85A0A1B0GTC6 90 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 C17orf112F2Z3M2 114 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 H7BYZ3 331 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 NGFP01138 241 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 SSPNQ14714 243 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 SLC35G3Q8N808 338 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 OR2Z1Q8NG97 314 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 CLDN23Q96B33 292 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.26□□□□□ -0.77
SYNPO-204ENST00000519664 UBE2L5PA0A1B0GUS4 154 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 TOX3O15405 576 aaPredicted RBP10.26□□□□□ -0.77
SYNPO-204ENST00000519664 ARG1P05089 322 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 HEXAP06865 529 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 OR8U8P0C7N1 319 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 LIFP15018 202 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 PCP4P48539 62 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 ZNF766Q5HY98 468 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 NHLRC3Q5JS37 347 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 OR2C3Q8N628 320 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 OR10AD1Q8NGE0 317 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 GALMQ96C23 342 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 SMIM7Q9BQ49 75 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 VPS25Q9BRG1 176 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 SOX7Q9BT81 388 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 RAB9BQ9NP90 201 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 PRDM6Q9NQX0 595 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 C19orf12Q9NSK7 152 aa10.26□□□□□ -0.77
SYNPO-204ENST00000519664 SEC14L6B5MCN3 397 aa10.25□□□□□ -0.77
SYNPO-204ENST00000519664 MGST1P10620 155 aaKnown RBP10.25□□□□□ -0.77
SYNPO-204ENST00000519664 RSRP1Q9BUV0 290 aa10.25□□□□□ -0.77
SYNPO-204ENST00000519664 GPR27Q9NS67 375 aa10.25□□□□□ -0.77
SYNPO-204ENST00000519664 DECR2Q9NUI1 292 aa10.25□□□□□ -0.77
SYNPO-204ENST00000519664 CACNG5Q9UF02 275 aa10.25□□□□□ -0.77
SYNPO-204ENST00000519664 IGKV1D-43A0A0B4J1Z2 117 aa10.25□□□□□ -0.77
SYNPO-204ENST00000519664 A0A0G2JK05 382 aa10.25□□□□□ -0.77
SYNPO-204ENST00000519664 CDIPTO14735 213 aa10.25□□□□□ -0.77
SYNPO-204ENST00000519664 HIKESHIQ53FT3 197 aa10.25□□□□□ -0.77
SYNPO-204ENST00000519664 NCMAPQ5T1S8 102 aa10.25□□□□□ -0.77
SYNPO-204ENST00000519664 ZNF383Q8NA42 475 aa10.25□□□□□ -0.77
SYNPO-204ENST00000519664 MSI2Q96DH6 328 aaKnown RBP10.25□□□□□ -0.77
SYNPO-204ENST00000519664 KCNK17Q96T54 332 aa10.25□□□□□ -0.77
SYNPO-204ENST00000519664 RTN4RQ9BZR6 473 aa10.25□□□□□ -0.77
SYNPO-204ENST00000519664 DUSP15Q9H1R2 295 aaPredicted RBP10.25□□□□□ -0.77
SYNPO-204ENST00000519664 GSN-AS1Q9NRJ2 163 aa10.25□□□□□ -0.77
SYNPO-204ENST00000519664 PROCRQ9UNN8 238 aa10.25□□□□□ -0.77
SYNPO-204ENST00000519664 DOCK10Q96BY6 2186 aa10.25□□□□□ -0.77
SYNPO-204ENST00000519664 ST8SIA5O15466 376 aa10.25□□□□□ -0.77
SYNPO-204ENST00000519664 FGF2P09038 288 aa10.25□□□□□ -0.77
SYNPO-204ENST00000519664 RCC1P18754 421 aaPredicted RBP10.25□□□□□ -0.77
SYNPO-204ENST00000519664 ZNF83P51522 516 aa10.25□□□□□ -0.77
SYNPO-204ENST00000519664 TRA2AQ13595 282 aaKnown RBP eCLIP10.25□□□□□ -0.77
SYNPO-204ENST00000519664 DEFB124Q8NES8 71 aa10.25□□□□□ -0.77
SYNPO-204ENST00000519664 PINX1Q96BK5 328 aaKnown RBP10.25□□□□□ -0.77
SYNPO-204ENST00000519664 UCK1Q9HA47 277 aa10.25□□□□□ -0.77
SYNPO-204ENST00000519664 SLC2A9Q9NRM0 540 aa10.25□□□□□ -0.77
SYNPO-204ENST00000519664 C3orf80F5H4A9 247 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 IGKV3-11P04433 115 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 CD81P60033 236 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 ROM1Q03395 351 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 SPOCK3Q9BQ16 436 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 CABLES2Q9BTV7 478 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 LPAR5Q9H1C0 372 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 TREM2Q9NZC2 230 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 LHFPL6Q9Y693 200 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 TRBV23-1A0A0A0MS06 115 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 A0A1W2PPQ1 181 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 CYB5BO43169 146 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 FABP4P15090 132 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 FGF8P55075 233 aaPredicted RBP10.24□□□□□ -0.77
SYNPO-204ENST00000519664 PKIAP61925 76 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 H3F3AP84243 136 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 UNQ9370/PRO34162Q6UXP9 181 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 CCL28Q9NRJ3 127 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 TMED3Q9Y3Q3 217 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 DICER1Q9UPY3 1922 aaKnown RBP10.24□□□□□ -0.77
SYNPO-204ENST00000519664 TERTO14746 1132 aaKnown RBP10.24□□□□□ -0.77
SYNPO-204ENST00000519664 GABRA4P48169 554 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 HES3Q5TGS1 186 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 PUSL1Q8N0Z8 303 aaKnown RBP10.24□□□□□ -0.77
SYNPO-204ENST00000519664 LIN7CQ9NUP9 197 aaKnown RBP10.24□□□□□ -0.77
SYNPO-204ENST00000519664 ZNF391Q9UJN7 358 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 TINAGQ9UJW2 476 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 STRAPQ9Y3F4 350 aaKnown RBP10.24□□□□□ -0.77
SYNPO-204ENST00000519664 LRP5LA4QPB2 252 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 OPN1MWP04001 364 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 OPN1MW2P0DN77 364 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 OPN1MW3P0DN78 364 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 OR3A1P47881 315 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms