RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 SLC7A10Q9NS82 523 aa7.35□□□□□ -1.23
LIMCH1-216ENST00000512820 MAP1LC3B2A6NCE7 125 aa7.35□□□□□ -1.23
LIMCH1-216ENST00000512820 KLRC4-KLRK1H3BQV0 150 aa7.35□□□□□ -1.23
LIMCH1-216ENST00000512820 TRAF3IP2O43734 574 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-216ENST00000512820 IRF2P14316 349 aa7.35□□□□□ -1.23
LIMCH1-216ENST00000512820 MST1P26927 711 aa7.35□□□□□ -1.23
LIMCH1-216ENST00000512820 GNG3P63215 75 aa7.35□□□□□ -1.23
LIMCH1-216ENST00000512820 STPG1Q5TH74 334 aa7.35□□□□□ -1.23
LIMCH1-216ENST00000512820 ZNF705AQ6ZN79 300 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-216ENST00000512820 ATP5SQ99766 215 aa7.35□□□□□ -1.23
LIMCH1-216ENST00000512820 MAP1LC3BQ9GZQ8 125 aa7.35□□□□□ -1.23
LIMCH1-216ENST00000512820 OPA3Q9H6K4 179 aa7.35□□□□□ -1.23
LIMCH1-216ENST00000512820 ZMAT5Q9UDW3 170 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-216ENST00000512820 TIMM8BQ9Y5J9 83 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-216ENST00000512820 MTCL1Q9Y4B5 1905 aaKnown RBP7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 NPIPB13A6NJU9 1138 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 DHRS7CA6NNS2 312 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 NPIPB4C9JG80 1138 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 KRASP01116 189 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 ZNF816Q0VGE8 651 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 OR8B8Q15620 311 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 C9orf152Q5JTZ5 239 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 ZNF574Q6ZN55 896 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 BAGE3Q86Y29 109 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 BAGE2Q86Y30 109 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 FAM58AQ8N1B3 248 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 SOX7Q9BT81 388 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 OCIAD1Q9NX40 245 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 OSGIN2Q9Y236 505 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 IGKV3D-11A0A0A0MRZ8 115 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 EPOPA6NHQ4 379 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 EIF3GO75821 320 aaKnown RBP eCLIP7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 FGF7P21781 194 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 EPHA8P29322 1005 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 FHL1Q13642 323 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 UBE2V2Q15819 145 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 PRAMEF5Q5TYX0 476 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 PRAMEF6Q5VXH4 476 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 C17orf78Q8N4C9 275 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 OR10V1Q8NGI7 309 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 RNF126Q9BV68 326 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 TUBG2Q9NRH3 451 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 P4HTMQ9NXG6 502 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 VSTM5A8MXK1 200 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 SPINK2P20155 84 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 RPS16P62249 146 aaKnown RBP7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 ACOT6Q3I5F7 207 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 FAM27BQ5VT28 67 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 ZNF66Q6ZN08 573 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 VASH2Q86V25 355 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 TMEM18Q96B42 140 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 OR2H1Q9GZK4 316 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 GPR27Q9NS67 375 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 TMEM38BQ9NVV0 291 aa7.34□□□□□ -1.23
LIMCH1-216ENST00000512820 SLC38A11Q08AI6 406 aa7.34□□□□□ -1.24
LIMCH1-216ENST00000512820 TMEM241Q24JQ0 296 aa7.34□□□□□ -1.24
LIMCH1-216ENST00000512820 MPV17LQ2QL34 196 aa7.34□□□□□ -1.24
LIMCH1-216ENST00000512820 C1QL2Q7Z5L3 287 aa7.34□□□□□ -1.24
LIMCH1-216ENST00000512820 SMRP1Q8NCR6 262 aa7.34□□□□□ -1.24
LIMCH1-216ENST00000512820 TMEM37Q8WXS4 190 aa7.34□□□□□ -1.24
LIMCH1-216ENST00000512820 DEFB127Q9H1M4 99 aa7.34□□□□□ -1.24
LIMCH1-216ENST00000512820 PRO1933Q9H354 126 aa7.34□□□□□ -1.24
LIMCH1-216ENST00000512820 CACFD1Q9UGQ2 172 aa7.34□□□□□ -1.24
LIMCH1-216ENST00000512820 CEP290O15078 2479 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 YIF1AO95070 293 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 LIFP15018 202 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 HLA-GP17693 338 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 BCL3P20749 454 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 TMEM50BP56557 158 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 TLE1Q04724 770 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 HIST1H2BAQ96A08 127 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 CIB3Q96Q77 187 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 ESRP2Q9H6T0 727 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 ARGFXA6NJG6 315 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 ZNF737O75373 536 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 CA6P23280 308 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 FHITP49789 147 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 EDDM3BP56851 147 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 SRSF3P84103 164 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 RTBDNQ9BSG5 229 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 DUSP13Q9UII6 198 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 A0A0J9YW62 118 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 SNCAP37840 140 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 CEACAM6P40199 344 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 UBE2G2P60604 165 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 PNRC1Q12796 327 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 ACER2Q5QJU3 275 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 NSUN5P2Q63ZY6 315 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 TDHQ8IZJ6 230 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 OR10AD1Q8NGE0 317 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 MSI2Q96DH6 328 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 MAP1BP46821 2468 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 PQLC2LA1A4F0 135 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 ZNF320A2RRD8 509 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 H0YIZ8 118 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 SYNGR2O43760 224 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 RPS2P15880 293 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 HNF1AP20823 631 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 RBM11P57052 281 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 RUNX1Q01196 453 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms