RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 OR8U9P0C7N5 309 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 CD80P33681 288 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 F2RL1P55085 397 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 CLDN15P56746 228 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 FXYD4P59646 89 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 ZNF92Q03936 586 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 PDZK1IP1Q13113 114 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 NAXEQ8NCW5 288 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 OR8U1Q8NH10 309 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 KCNE4Q8WWG9 221 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 MSI2Q96DH6 328 aaKnown RBP13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 FOXB1Q99853 325 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 IL36GQ9NZH8 169 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 ZDHHC8Q9ULC8 765 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 E5RGE8 158 aa13.89□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 Q0VFX4 171 aa13.89□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 PDCD1Q15116 288 aa13.89□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 ABCA11PQ4W5N1 156 aa13.89□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 PHLDA2Q53GA4 152 aa13.89□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 ABLIM2Q6H8Q1 611 aa13.89□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 LIAT1Q6ZQX7 453 aa13.89□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 OR14L1PQ8NHC6 308 aa13.89□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 SGCZQ96LD1 299 aa13.89□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 SLC2A9Q9NRM0 540 aa13.89□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 NSG2Q9Y328 171 aa13.89□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 TIMM10BQ9Y5J6 103 aa13.89□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 MEX3AA1L020 520 aaKnown RBP13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 LRRC3CA6NJW4 275 aa13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 MT-CO3P00414 261 aa13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 FOLR3P41439 243 aa13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 TRA2AQ13595 282 aaKnown RBP eCLIP13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 CEACAM16Q2WEN9 425 aa13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 OR11L1Q8NGX0 322 aa13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 KIRREL1Q96J84 757 aa13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 SUCNR1Q9BXA5 334 aa13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 ST3GAL6Q9Y274 331 aa13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 POMT1Q9Y6A1 747 aa13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 ACACAQ13085 2346 aa13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 APC2O95996 2303 aa13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 ZNF587BE7ETH6 402 aa13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 DIRAS3O95661 229 aa13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 GLI4P10075 376 aa13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 EDN3P14138 238 aa13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 FUT6P51993 359 aa13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 DVL1P1P54792 670 aaPredicted RBP13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 SPCS3P61009 180 aa13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 DEFA6Q01524 100 aa13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 OR52M1Q8NGK5 317 aa13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 RXFP4Q8TDU9 374 aa13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 MOB3AQ96BX8 217 aa13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 SCRT1Q9BWW7 348 aa13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 PARP12Q9H0J9 701 aaKnown RBP13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 DLL3Q9NYJ7 618 aa13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 ZNF391Q9UJN7 358 aa13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 LOXL2Q9Y4K0 774 aa13.88□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 C5orf52A6NGY3 159 aa13.87□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 XRCC2O43543 280 aa13.87□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 P04436 131 aa13.87□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 CRYBA1P05813 215 aa13.87□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 FOLR2P14207 255 aa13.87□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 UCP3P55916 312 aa13.87□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 RAB5BP61020 215 aa13.87□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 OR8B8Q15620 311 aa13.87□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 RBMS3Q6XE24 437 aaKnown RBP13.87□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 OR5L1Q8NGL2 311 aa13.87□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 OR10D3Q8NH80 312 aa13.87□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 ZNF286AQ9HBT8 521 aa13.87□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 GPR35Q9HC97 309 aa13.87□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 GPR137BO60478 399 aa13.87□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 PDCD6O75340 191 aa13.87□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 WIPI1Q5MNZ9 446 aaPredicted RBP13.87□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 PPP1R32Q7Z5V6 425 aa13.87□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 CALHM1Q8IU99 346 aa13.87□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 OR2V1Q8NHB1 315 aa13.87□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 HPSE2Q8WWQ2 592 aa13.87□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 PIGCQ92535 297 aa13.87□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 RGCCQ9H4X1 137 aa13.87□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 DEPPQ9NTK1 212 aa13.87□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 TREM2Q9NZC2 230 aa13.87□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 STARD10Q9Y365 291 aa13.87□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 PCSK5Q92824 1860 aa13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 COLCA2A8K830 154 aa13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 MMP7P09237 267 aaPredicted RBP13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 TSPAN7P41732 249 aa13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 UCP2P55851 309 aa13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 RBM11P57052 281 aaKnown RBP13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 RAB4BP61018 213 aa13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 RPS18P62269 152 aaKnown RBP13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 SNRPEP62304 92 aaKnown RBP13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 OR2B11Q5JQS5 317 aa13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 RIPPLY2Q5TAB7 128 aa13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 C2CD4CQ8TF44 421 aa13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 CPNE4Q96A23 557 aaPredicted RBP13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 GINS3Q9BRX5 216 aa13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 RSRP1Q9BUV0 290 aa13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 CACFD1Q9UGQ2 172 aa13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 SLC7A11Q9UPY5 501 aa13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 GPR37O15354 613 aa13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 SEC11BP0C7V7 166 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms