RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 AGAP6Q5VW22 663 aa18.2■□□□□ 0.5
SMC4-221ENST00000489573 BPIFB2Q8N4F0 458 aa18.2■□□□□ 0.5
SMC4-221ENST00000489573 BEST4Q8NFU0 473 aa18.2■□□□□ 0.5
SMC4-221ENST00000489573 MAFIPQ8WZ33 124 aa18.2■□□□□ 0.5
SMC4-221ENST00000489573 CACNG6Q9BXT2 260 aa18.2■□□□□ 0.5
SMC4-221ENST00000489573 TINAGL1Q9GZM7 467 aaPredicted RBP18.2■□□□□ 0.5
SMC4-221ENST00000489573 ETAA1Q9NY74 926 aa18.2■□□□□ 0.5
SMC4-221ENST00000489573 COPZ2Q9P299 210 aa18.2■□□□□ 0.5
SMC4-221ENST00000489573 EDARQ9UNE0 448 aa18.2■□□□□ 0.5
SMC4-221ENST00000489573 WIPI2Q9Y4P8 454 aa18.2■□□□□ 0.5
SMC4-221ENST00000489573 hCG_2014768A0A024R1R8 64 aa18.19■□□□□ 0.5
SMC4-221ENST00000489573 FAM221AA4D161 298 aa18.19■□□□□ 0.5
SMC4-221ENST00000489573 RFPL4AA6NLU0 287 aa18.19■□□□□ 0.5
SMC4-221ENST00000489573 LRRC30A6NM36 301 aa18.19■□□□□ 0.5
SMC4-221ENST00000489573 RFPL4AL1F8VTS6 287 aa18.19■□□□□ 0.5
SMC4-221ENST00000489573 IFNL4K9M1U5 179 aa18.19■□□□□ 0.5
SMC4-221ENST00000489573 CYB5R3P00387 301 aaPredicted RBP18.19■□□□□ 0.5
SMC4-221ENST00000489573 CCR6P51684 374 aa18.19■□□□□ 0.5
SMC4-221ENST00000489573 SRSF1Q07955 248 aaKnown RBP eCLIP18.19■□□□□ 0.59e-8■■□□□ 13.7
SMC4-221ENST00000489573 SFRP4Q6FHJ7 346 aaPredicted RBP18.19■□□□□ 0.5
SMC4-221ENST00000489573 ZNF782Q6ZMW2 699 aaPredicted RBP18.19■□□□□ 0.5
SMC4-221ENST00000489573 OR4K15Q8NH41 348 aa18.19■□□□□ 0.5
SMC4-221ENST00000489573 CHMP1AQ9HD42 196 aaPredicted RBP18.19■□□□□ 0.5
SMC4-221ENST00000489573 TREM2Q9NZC2 230 aa18.19■□□□□ 0.5
SMC4-221ENST00000489573 ICE1Q9Y2F5 2266 aa18.19■□□□□ 0.5
SMC4-221ENST00000489573 A0A1W2PPR1 153 aa18.18■□□□□ 0.5
SMC4-221ENST00000489573 LMO1P25800 156 aa18.18■□□□□ 0.5
SMC4-221ENST00000489573 CD80P33681 288 aa18.18■□□□□ 0.5
SMC4-221ENST00000489573 HRH1P35367 487 aa18.18■□□□□ 0.5
SMC4-221ENST00000489573 MDH2P40926 338 aaKnown RBP18.18■□□□□ 0.5
SMC4-221ENST00000489573 SHEQ5VZ18 495 aa18.18■□□□□ 0.5
SMC4-221ENST00000489573 OR56B4Q8NH76 319 aa18.18■□□□□ 0.5
SMC4-221ENST00000489573 SEBOXQ9HB31 216 aaPredicted RBP18.18■□□□□ 0.5
SMC4-221ENST00000489573 OR2AT4A6NND4 320 aa18.17■□□□□ 0.5
SMC4-221ENST00000489573 J3QKU1 62 aa18.17■□□□□ 0.5
SMC4-221ENST00000489573 NAPSAO96009 420 aa18.17■□□□□ 0.5
SMC4-221ENST00000489573 PSG2P11465 335 aa18.17■□□□□ 0.5
SMC4-221ENST00000489573 TAS2R46P59540 309 aa18.17■□□□□ 0.5
SMC4-221ENST00000489573 MICBQ29980 383 aa18.17■□□□□ 0.5
SMC4-221ENST00000489573 C11orf71Q6IPW1 123 aa18.17■□□□□ 0.5
SMC4-221ENST00000489573 TGIF2LYQ8IUE0 185 aa18.17■□□□□ 0.5
SMC4-221ENST00000489573 VRK1Q99986 396 aaPredicted RBP18.17■□□□□ 0.5
SMC4-221ENST00000489573 SPOCK3Q9BQ16 436 aa18.17■□□□□ 0.5
SMC4-221ENST00000489573 RIMS4Q9H426 269 aaPredicted RBP18.17■□□□□ 0.5
SMC4-221ENST00000489573 NUBP2Q9Y5Y2 271 aa18.17■□□□□ 0.5
SMC4-221ENST00000489573 ROS1P08922 2347 aa18.17■□□□□ 0.5
SMC4-221ENST00000489573 IGHV3OR15-7A0A075B7D8 119 aa18.17■□□□□ 0.5
SMC4-221ENST00000489573 DISC1C4P0D8 188 aa18.17■□□□□ 0.5
SMC4-221ENST00000489573 PMP2P02689 132 aa18.17■□□□□ 0.5
SMC4-221ENST00000489573 TCRBP04435 133 aa18.17■□□□□ 0.5
SMC4-221ENST00000489573 AMY2AP04746 511 aa18.17■□□□□ 0.5
SMC4-221ENST00000489573 DANCRP0C864 163 aa18.17■□□□□ 0.5
SMC4-221ENST00000489573 DTX2Q86UW9 622 aa18.17■□□□□ 0.5
SMC4-221ENST00000489573 C1orf87Q8N0U7 546 aa18.17■□□□□ 0.5
SMC4-221ENST00000489573 OR5T2Q8NGG2 359 aa18.17■□□□□ 0.5
SMC4-221ENST00000489573 OR51S1Q8NGJ8 323 aa18.17■□□□□ 0.5
SMC4-221ENST00000489573 OR5H2Q8NGV7 314 aa18.17■□□□□ 0.5
SMC4-221ENST00000489573 UPRTQ96BW1 309 aa18.17■□□□□ 0.5
SMC4-221ENST00000489573 PPA2Q9H2U2 334 aa18.17■□□□□ 0.5
SMC4-221ENST00000489573 IGKV1D-17A0A075B6S4 117 aa18.16■□□□□ 0.5
SMC4-221ENST00000489573 IGKV1D-8A0A087WSZ0 117 aa18.16■□□□□ 0.5
SMC4-221ENST00000489573 PSPNO60542 156 aa18.16■□□□□ 0.5
SMC4-221ENST00000489573 SOD3P08294 240 aa18.16■□□□□ 0.5
SMC4-221ENST00000489573 ZNF735P0CB33 412 aa18.16■□□□□ 0.5
SMC4-221ENST00000489573 PRDX2P32119 198 aa18.16■□□□□ 0.5
SMC4-221ENST00000489573 COL10A1Q03692 680 aa18.16■□□□□ 0.5
SMC4-221ENST00000489573 CHRFAM7AQ494W8 412 aa18.16■□□□□ 0.5
SMC4-221ENST00000489573 VAX1Q5SQQ9 334 aa18.16■□□□□ 0.5
SMC4-221ENST00000489573 FAM201AQ5SY85 155 aa18.16■□□□□ 0.5
SMC4-221ENST00000489573 RSBN1Q5VWQ0 802 aaPredicted RBP18.16■□□□□ 0.5
SMC4-221ENST00000489573 CD177Q8N6Q3 437 aa18.16■□□□□ 0.5
SMC4-221ENST00000489573 CREB3L1Q96BA8 519 aa18.16■□□□□ 0.5
SMC4-221ENST00000489573 ZNF286AQ9HBT8 521 aa18.16■□□□□ 0.5
SMC4-221ENST00000489573 TMEM165Q9HC07 324 aa18.16■□□□□ 0.5
SMC4-221ENST00000489573 DCAF16Q9NXF7 216 aa18.16■□□□□ 0.5
SMC4-221ENST00000489573 CACNA1DQ01668 2161 aa18.15■□□□□ 0.5
SMC4-221ENST00000489573 CD8AP01732 235 aa18.15■□□□□ 0.5
SMC4-221ENST00000489573 HPXP02790 462 aa18.15■□□□□ 0.5
SMC4-221ENST00000489573 TFF1P04155 84 aa18.15■□□□□ 0.5
SMC4-221ENST00000489573 CSN2P05814 226 aa18.15■□□□□ 0.5
SMC4-221ENST00000489573 Q6ZPA2 131 aa18.15■□□□□ 0.5
SMC4-221ENST00000489573 OR5AP2Q8NGF4 316 aa18.15■□□□□ 0.5
SMC4-221ENST00000489573 PLPPR1Q8TBJ4 325 aa18.15■□□□□ 0.5
SMC4-221ENST00000489573 MRPL30Q8TCC3 161 aaKnown RBP18.15■□□□□ 0.5
SMC4-221ENST00000489573 SLC6A7Q99884 636 aa18.15■□□□□ 0.5
SMC4-221ENST00000489573 MARVELD1Q9BSK0 173 aa18.15■□□□□ 0.5
SMC4-221ENST00000489573 TRAF4Q9BUZ4 470 aaPredicted RBP18.15■□□□□ 0.5
SMC4-221ENST00000489573 UBTD1Q9HAC8 227 aa18.15■□□□□ 0.5
SMC4-221ENST00000489573 TMEM106BQ9NUM4 274 aa18.15■□□□□ 0.5
SMC4-221ENST00000489573 NUDT15Q9NV35 164 aa18.15■□□□□ 0.5
SMC4-221ENST00000489573 ANXA10Q9UJ72 324 aa18.15■□□□□ 0.5
SMC4-221ENST00000489573 TRBV6-6A0A0A6YYG2 114 aa18.14■□□□□ 0.49
SMC4-221ENST00000489573 OOEPA6NGQ2 149 aa18.14■□□□□ 0.49
SMC4-221ENST00000489573 H7C1Q1 480 aa18.14■□□□□ 0.49
SMC4-221ENST00000489573 IFNA6P05013 189 aa18.14■□□□□ 0.49
SMC4-221ENST00000489573 OR3A3P47888 321 aa18.14■□□□□ 0.49
SMC4-221ENST00000489573 KCNJ3P48549 501 aa18.14■□□□□ 0.49
SMC4-221ENST00000489573 ARPC4P59998 168 aa18.14■□□□□ 0.49
SMC4-221ENST00000489573 ZMYND11Q15326 602 aa18.14■□□□□ 0.49
SMC4-221ENST00000489573 SRSF7Q16629 238 aaKnown RBP eCLIP18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms