RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 DUSP1P28562 367 aa12.06□□□□□ -0.48
LIMS3-205ENST00000487150 FABP5Q01469 135 aa12.06□□□□□ -0.48
LIMS3-205ENST00000487150 PAX5Q02548 391 aa12.06□□□□□ -0.48
LIMS3-205ENST00000487150 INSL4Q14641 139 aa12.06□□□□□ -0.48
LIMS3-205ENST00000487150 PAN3Q58A45 887 aaKnown RBP12.06□□□□□ -0.48
LIMS3-205ENST00000487150 SYT6Q5T7P8 510 aaPredicted RBP12.06□□□□□ -0.48
LIMS3-205ENST00000487150 TMEM91Q6ZNR0 172 aa12.06□□□□□ -0.48
LIMS3-205ENST00000487150 LRRTM1Q86UE6 522 aa12.06□□□□□ -0.48
LIMS3-205ENST00000487150 TSPAN14Q8NG11 270 aa12.06□□□□□ -0.48
LIMS3-205ENST00000487150 TBX15Q96SF7 602 aa12.06□□□□□ -0.48
LIMS3-205ENST00000487150 GAL3ST2Q9H3Q3 398 aa12.06□□□□□ -0.48
LIMS3-205ENST00000487150 OCEL1Q9H607 264 aa12.06□□□□□ -0.48
LIMS3-205ENST00000487150 PLGRKTQ9HBL7 147 aa12.06□□□□□ -0.48
LIMS3-205ENST00000487150 C19orf12Q9NSK7 152 aa12.06□□□□□ -0.48
LIMS3-205ENST00000487150 OR6C3Q9NZP0 311 aa12.06□□□□□ -0.48
LIMS3-205ENST00000487150 STUB1Q9UNE7 303 aa12.06□□□□□ -0.48
LIMS3-205ENST00000487150 SSR3Q9UNL2 185 aa12.06□□□□□ -0.48
LIMS3-205ENST00000487150 TRGV10A0A0A0MS01 117 aa12.05□□□□□ -0.48
LIMS3-205ENST00000487150 TMEM82A0PJX8 343 aa12.05□□□□□ -0.48
LIMS3-205ENST00000487150 SLC33A1O00400 549 aaPredicted RBP12.05□□□□□ -0.48
LIMS3-205ENST00000487150 PSPNO60542 156 aa12.05□□□□□ -0.48
LIMS3-205ENST00000487150 BPNT1O95861 308 aa12.05□□□□□ -0.48
LIMS3-205ENST00000487150 PRTN3P24158 256 aa12.05□□□□□ -0.48
LIMS3-205ENST00000487150 HTR2CP28335 458 aa12.05□□□□□ -0.48
LIMS3-205ENST00000487150 OR3A1P47881 315 aa12.05□□□□□ -0.48
LIMS3-205ENST00000487150 ERVFRD-1P60508 538 aa12.05□□□□□ -0.48
LIMS3-205ENST00000487150 SCN1BQ07699 218 aa12.05□□□□□ -0.48
LIMS3-205ENST00000487150 FAM189A2Q15884 450 aa12.05□□□□□ -0.48
LIMS3-205ENST00000487150 PIGYQ3MUY2 71 aa12.05□□□□□ -0.48
LIMS3-205ENST00000487150 C1orf100Q5SVJ3 147 aa12.05□□□□□ -0.48
LIMS3-205ENST00000487150 TMEM200BQ69YZ2 307 aa12.05□□□□□ -0.48
LIMS3-205ENST00000487150 RNF144BQ7Z419 303 aa12.05□□□□□ -0.48
LIMS3-205ENST00000487150 VMO1Q7Z5L0 202 aa12.05□□□□□ -0.48
LIMS3-205ENST00000487150 LYPD6Q86Y78 171 aa12.05□□□□□ -0.48
LIMS3-205ENST00000487150 FGFRL1Q8N441 504 aa12.05□□□□□ -0.48
LIMS3-205ENST00000487150 OR10K1Q8NGX5 313 aa12.05□□□□□ -0.48
LIMS3-205ENST00000487150 KCNG3Q8TAE7 436 aa12.05□□□□□ -0.48
LIMS3-205ENST00000487150 ZNF714Q96N38 554 aa12.05□□□□□ -0.48
LIMS3-205ENST00000487150 NR1H4Q96RI1 486 aaPredicted RBP12.05□□□□□ -0.48
LIMS3-205ENST00000487150 BARHL1Q9BZE3 327 aa12.05□□□□□ -0.48
LIMS3-205ENST00000487150 CHST6Q9GZX3 395 aa12.05□□□□□ -0.48
LIMS3-205ENST00000487150 PPA2Q9H2U2 334 aa12.05□□□□□ -0.48
LIMS3-205ENST00000487150 NCOR1P1Q9H4R4 102 aa12.05□□□□□ -0.48
LIMS3-205ENST00000487150 HEXA-AS1Q9H8Q6 139 aa12.05□□□□□ -0.48
LIMS3-205ENST00000487150 ZMAT3Q9HA38 289 aaKnown RBP12.05□□□□□ -0.48
LIMS3-205ENST00000487150 UBE2J1Q9Y385 318 aaPredicted RBP12.05□□□□□ -0.48
LIMS3-205ENST00000487150 SETD2Q9BYW2 2564 aaPredicted RBP12.05□□□□□ -0.48
LIMS3-205ENST00000487150 IGHV1-69DA0A0B4J2H0 117 aa12.04□□□□□ -0.48
LIMS3-205ENST00000487150 A0A0G2JK05 382 aa12.04□□□□□ -0.48
LIMS3-205ENST00000487150 SLC17A2O00624 439 aa12.04□□□□□ -0.48
LIMS3-205ENST00000487150 SLC22A1O15245 554 aa12.04□□□□□ -0.48
LIMS3-205ENST00000487150 CRTAPO75718 401 aaPredicted RBP12.04□□□□□ -0.48
LIMS3-205ENST00000487150 IGHV1-69P01742 117 aa12.04□□□□□ -0.48
LIMS3-205ENST00000487150 ZNF728P0DKX0 622 aa12.04□□□□□ -0.48
LIMS3-205ENST00000487150 CALCBP10092 127 aa12.04□□□□□ -0.48
LIMS3-205ENST00000487150 MGMTP16455 207 aa12.04□□□□□ -0.48
LIMS3-205ENST00000487150 FGF9P31371 208 aaPredicted RBP12.04□□□□□ -0.48
LIMS3-205ENST00000487150 RBM39Q14498 530 aaKnown RBP12.04□□□□□ -0.48
LIMS3-205ENST00000487150 NEDD8Q15843 81 aa12.04□□□□□ -0.48
LIMS3-205ENST00000487150 RAB11BQ15907 218 aa12.04□□□□□ -0.48
LIMS3-205ENST00000487150 KLF17Q5JT82 389 aaPredicted RBP12.04□□□□□ -0.48
LIMS3-205ENST00000487150 KRBOX4Q5JUW0 171 aa12.04□□□□□ -0.48
LIMS3-205ENST00000487150 Q6P435 159 aa12.04□□□□□ -0.48
LIMS3-205ENST00000487150 TRAPPC6BQ86SZ2 158 aa12.04□□□□□ -0.48
LIMS3-205ENST00000487150 OR4S1Q8NGB4 309 aa12.04□□□□□ -0.48
LIMS3-205ENST00000487150 OR4M1Q8NGD0 313 aa12.04□□□□□ -0.48
LIMS3-205ENST00000487150 OR4D6Q8NGJ1 314 aa12.04□□□□□ -0.48
LIMS3-205ENST00000487150 V9GY05 133 aa12.04□□□□□ -0.48
LIMS3-205ENST00000487150 ANK3Q12955 4377 aaKnown RBP12.04□□□□□ -0.48
LIMS3-205ENST00000487150 NF1P21359 2839 aa12.03□□□□□ -0.48
LIMS3-205ENST00000487150 CA11O75493 328 aa12.03□□□□□ -0.48
LIMS3-205ENST00000487150 GLAP06280 429 aa12.03□□□□□ -0.48
LIMS3-205ENST00000487150 IGHV4-38-2P0DP08 117 aa12.03□□□□□ -0.48
LIMS3-205ENST00000487150 CD37P11049 281 aa12.03□□□□□ -0.48
LIMS3-205ENST00000487150 GP2P55259 537 aaKnown RBP12.03□□□□□ -0.48
LIMS3-205ENST00000487150 OR2W3Q7Z3T1 314 aa12.03□□□□□ -0.48
LIMS3-205ENST00000487150 ZFAND2BQ8WV99 257 aa12.03□□□□□ -0.48
LIMS3-205ENST00000487150 LHX4Q969G2 390 aa12.03□□□□□ -0.48
LIMS3-205ENST00000487150 URM1Q9BTM9 101 aaKnown RBP12.03□□□□□ -0.48
LIMS3-205ENST00000487150 TMEM59Q9BXS4 323 aa12.03□□□□□ -0.48
LIMS3-205ENST00000487150 RAB9BQ9NP90 201 aa12.03□□□□□ -0.48
LIMS3-205ENST00000487150 SIRT7Q9NRC8 400 aa12.03□□□□□ -0.48
LIMS3-205ENST00000487150 TAS2R3Q9NYW6 316 aa12.03□□□□□ -0.48
LIMS3-205ENST00000487150 NIPBLQ6KC79 2804 aaeCLIP12.02□□□□□ -0.48
LIMS3-205ENST00000487150 CENPVL3A0A0U1RRI6 287 aa12.02□□□□□ -0.49
LIMS3-205ENST00000487150 ODAMA1E959 279 aa12.02□□□□□ -0.49
LIMS3-205ENST00000487150 GEMIN2O14893 280 aaKnown RBP12.02□□□□□ -0.49
LIMS3-205ENST00000487150 CLPXO76031 633 aa12.02□□□□□ -0.49
LIMS3-205ENST00000487150 ARSBP15848 533 aa12.02□□□□□ -0.49
LIMS3-205ENST00000487150 CFPP27918 469 aa12.02□□□□□ -0.49
LIMS3-205ENST00000487150 UBE2E1P51965 193 aa12.02□□□□□ -0.49
LIMS3-205ENST00000487150 HILS1P60008 231 aa12.02□□□□□ -0.49
LIMS3-205ENST00000487150 ZNF273Q14593 569 aa12.02□□□□□ -0.49
LIMS3-205ENST00000487150 ATXN7L3Q14CW9 347 aaPredicted RBP12.02□□□□□ -0.49
LIMS3-205ENST00000487150 MIDNQ504T8 468 aa12.02□□□□□ -0.49
LIMS3-205ENST00000487150 C22orf42Q6IC83 251 aa12.02□□□□□ -0.49
LIMS3-205ENST00000487150 OR52W1Q6IF63 320 aa12.02□□□□□ -0.49
LIMS3-205ENST00000487150 GDPGP1Q6ZNW5 385 aa12.02□□□□□ -0.49
LIMS3-205ENST00000487150 TPRA1Q86W33 373 aa12.02□□□□□ -0.49
LIMS3-205ENST00000487150 PRIMA1Q86XR5 153 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms