RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 MS4A7Q9GZW8 240 aaPredicted RBP13.03□□□□□ -0.32
UPF3A-208ENST00000484246 NCOR1P1Q9H4R4 102 aa13.03□□□□□ -0.32
UPF3A-208ENST00000484246 MRPS28Q9Y2Q9 187 aaKnown RBP13.03□□□□□ -0.32
UPF3A-208ENST00000484246 LINC00312Q9Y6C7 94 aa13.03□□□□□ -0.32
UPF3A-208ENST00000484246 WNK2Q9Y3S1 2297 aa13.02□□□□□ -0.32
UPF3A-208ENST00000484246 MXRA5Q9NR99 2828 aa13.02□□□□□ -0.33
UPF3A-208ENST00000484246 hADV38S2A0JD32 116 aa13.02□□□□□ -0.33
UPF3A-208ENST00000484246 FUOMA2VDF0 154 aa13.02□□□□□ -0.33
UPF3A-208ENST00000484246 C17orf98A8MV24 154 aa13.02□□□□□ -0.33
UPF3A-208ENST00000484246 SIRPB1O00241 398 aa13.02□□□□□ -0.33
UPF3A-208ENST00000484246 CSTBP04080 98 aaKnown RBP13.02□□□□□ -0.33
UPF3A-208ENST00000484246 GTF2F2P13984 249 aa13.02□□□□□ -0.33
UPF3A-208ENST00000484246 ZNF44P15621 663 aa13.02□□□□□ -0.33
UPF3A-208ENST00000484246 SRMP19623 302 aa13.02□□□□□ -0.33
UPF3A-208ENST00000484246 SNU13P55769 128 aaKnown RBP13.02□□□□□ -0.33
UPF3A-208ENST00000484246 FABP5Q01469 135 aa13.02□□□□□ -0.33
UPF3A-208ENST00000484246 C1orf100Q5SVJ3 147 aa13.02□□□□□ -0.33
UPF3A-208ENST00000484246 BCL6BQ8N143 479 aaPredicted RBP13.02□□□□□ -0.33
UPF3A-208ENST00000484246 OR4M1Q8NGD0 313 aa13.02□□□□□ -0.33
UPF3A-208ENST00000484246 OR10K1Q8NGX5 313 aa13.02□□□□□ -0.33
UPF3A-208ENST00000484246 LHX4Q969G2 390 aa13.02□□□□□ -0.33
UPF3A-208ENST00000484246 ZNF48Q96MX3 618 aaPredicted RBP13.02□□□□□ -0.33
UPF3A-208ENST00000484246 S100A13Q99584 98 aa13.02□□□□□ -0.33
UPF3A-208ENST00000484246 CHST6Q9GZX3 395 aa13.02□□□□□ -0.33
UPF3A-208ENST00000484246 SLITRK2Q9H156 845 aa13.02□□□□□ -0.33
UPF3A-208ENST00000484246 CUBNO60494 3623 aa13.02□□□□□ -0.33
UPF3A-208ENST00000484246 IGHV3OR16-10A0A075B7F0 116 aa13.01□□□□□ -0.33
UPF3A-208ENST00000484246 TRAV24A0A0B4J272 114 aa13.01□□□□□ -0.33
UPF3A-208ENST00000484246 hCG_1809904A0A1W2PP81 198 aa13.01□□□□□ -0.33
UPF3A-208ENST00000484246 A0A1W2PPE2 198 aa13.01□□□□□ -0.33
UPF3A-208ENST00000484246 A0A1W2PR64 198 aa13.01□□□□□ -0.33
UPF3A-208ENST00000484246 A0A1W2PRV1 198 aa13.01□□□□□ -0.33
UPF3A-208ENST00000484246 RNASEK-C17orf49H0YIS7 233 aa13.01□□□□□ -0.33
UPF3A-208ENST00000484246 CCRL2O00421 344 aa13.01□□□□□ -0.33
UPF3A-208ENST00000484246 DEGS1O15121 323 aa13.01□□□□□ -0.33
UPF3A-208ENST00000484246 HTR3BO95264 441 aa13.01□□□□□ -0.33
UPF3A-208ENST00000484246 UBBP0CG47 229 aa13.01□□□□□ -0.33
UPF3A-208ENST00000484246 ZNF728P0DKX0 622 aa13.01□□□□□ -0.33
UPF3A-208ENST00000484246 EDDM3BP56851 147 aa13.01□□□□□ -0.33
UPF3A-208ENST00000484246 PIGYQ3MUY2 71 aa13.01□□□□□ -0.33
UPF3A-208ENST00000484246 GLT8D1Q68CQ7 371 aa13.01□□□□□ -0.33
UPF3A-208ENST00000484246 AWAT2Q6E213 333 aa13.01□□□□□ -0.33
UPF3A-208ENST00000484246 HCP5Q6MZN7 132 aa13.01□□□□□ -0.33
UPF3A-208ENST00000484246 GLIPR1L1Q6UWM5 242 aa13.01□□□□□ -0.33
UPF3A-208ENST00000484246 BRD3OSQ6XYD6 125 aa13.01□□□□□ -0.33
UPF3A-208ENST00000484246 CORO2AQ92828 525 aa13.01□□□□□ -0.33
UPF3A-208ENST00000484246 ZMAT3Q9HA38 289 aaKnown RBP13.01□□□□□ -0.33
UPF3A-208ENST00000484246 SIRT7Q9NRC8 400 aa13.01□□□□□ -0.33
UPF3A-208ENST00000484246 RCC2Q9P258 522 aaKnown RBP13.01□□□□□ -0.33
UPF3A-208ENST00000484246 ING4Q9UNL4 249 aa13.01□□□□□ -0.33
UPF3A-208ENST00000484246 ST3GAL6Q9Y274 331 aa13.01□□□□□ -0.33
UPF3A-208ENST00000484246 UBE2J1Q9Y385 318 aaPredicted RBP13.01□□□□□ -0.33
UPF3A-208ENST00000484246 ATRQ13535 2644 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 TRDV1A0A1B0GX56 115 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 FAM90A10PA6NDY2 464 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 FAM90A18PA6NE21 464 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 FAM90A16PA6NEW6 464 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 FAM90A20PA6NIJ5 464 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 FAM90A8PA6NJQ4 464 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 FAM90A7PA6NKC0 464 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 FAM90A22PA8MWA6 464 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 FAM90A12PA8MX19 464 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 FAM90A5PA8MXJ8 464 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 FAM90A23PA8MXZ1 464 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 CLDN34H7C241 214 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 SLC22A1O15245 554 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 VENTXO95231 258 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 FAM90A15PP0C7V4 464 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 FAM90A13PP0C7W8 464 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 FAM90A14PP0C7W9 464 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 FAM90A24PP0C7X0 464 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 CCL3L1P16619 93 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 SERPINA2P20848 420 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 CFPP27918 469 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 UBE2E1P51965 193 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 ERVFRD-1P60508 538 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 EDDM3AQ14507 147 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 SLC22A6Q4U2R8 563 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 SYT6Q5T7P8 510 aaPredicted RBP13□□□□□ -0.33
UPF3A-208ENST00000484246 SIGLECL1Q8N7X8 197 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 OR6M1Q8NGM8 313 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 C22orf15Q8WYQ4 148 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 TMEM158Q8WZ71 300 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 COQ2Q96H96 371 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 ZNF714Q96N38 554 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 PPA2Q9H2U2 334 aa13□□□□□ -0.33
UPF3A-208ENST00000484246 TRAV1-2A0A0B4J238 106 aa12.99□□□□□ -0.33
UPF3A-208ENST00000484246 A0A1W2PP11 408 aa12.99□□□□□ -0.33
UPF3A-208ENST00000484246 ODAMA1E959 279 aa12.99□□□□□ -0.33
UPF3A-208ENST00000484246 TNFAIP8O95379 198 aa12.99□□□□□ -0.33
UPF3A-208ENST00000484246 PSMB9P28065 219 aa12.99□□□□□ -0.33
UPF3A-208ENST00000484246 KRTAP24-1Q3LI83 254 aa12.99□□□□□ -0.33
UPF3A-208ENST00000484246 PAN3Q58A45 887 aaKnown RBP12.99□□□□□ -0.33
UPF3A-208ENST00000484246 RUSC1-AS1Q66K80 236 aa12.99□□□□□ -0.33
UPF3A-208ENST00000484246 RBMS3Q6XE24 437 aaKnown RBP12.99□□□□□ -0.33
UPF3A-208ENST00000484246 ZDHHC22Q8N966 263 aa12.99□□□□□ -0.33
UPF3A-208ENST00000484246 CST11Q9H112 138 aa12.99□□□□□ -0.33
UPF3A-208ENST00000484246 SPACA1Q9HBV2 294 aa12.99□□□□□ -0.33
UPF3A-208ENST00000484246 ESM1Q9NQ30 184 aa12.99□□□□□ -0.33
UPF3A-208ENST00000484246 TAS2R3Q9NYW6 316 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms