RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 EFNA2O43921 213 aa11.54□□□□□ -0.56
USP40-214ENST00000483519 ZNF205O95201 554 aa11.54□□□□□ -0.56
USP40-214ENST00000483519 OMGP23515 440 aa11.54□□□□□ -0.56
USP40-214ENST00000483519 MSX1P28360 303 aa11.54□□□□□ -0.56
USP40-214ENST00000483519 SLC25A53Q5H9E4 307 aa11.54□□□□□ -0.56
USP40-214ENST00000483519 SP5Q6BEB4 398 aaPredicted RBP11.54□□□□□ -0.56
USP40-214ENST00000483519 Q6ZSR3 168 aa11.54□□□□□ -0.56
USP40-214ENST00000483519 THNSL2Q86YJ6 484 aa11.54□□□□□ -0.56
USP40-214ENST00000483519 SPEM1Q8N4L4 309 aa11.54□□□□□ -0.56
USP40-214ENST00000483519 OR5C1Q8NGR4 320 aa11.54□□□□□ -0.56
USP40-214ENST00000483519 OR11L1Q8NGX0 322 aa11.54□□□□□ -0.56
USP40-214ENST00000483519 SPSB1Q96BD6 273 aa11.54□□□□□ -0.56
USP40-214ENST00000483519 ZNF845Q96IR2 970 aaPredicted RBP11.54□□□□□ -0.56
USP40-214ENST00000483519 C2orf88Q9BSF0 95 aa11.54□□□□□ -0.56
USP40-214ENST00000483519 KLRF1Q9NZS2 232 aa11.54□□□□□ -0.56
USP40-214ENST00000483519 MMP17Q9ULZ9 603 aa11.54□□□□□ -0.56
USP40-214ENST00000483519 RFNGQ9Y644 331 aa11.54□□□□□ -0.56
USP40-214ENST00000483519 TRDCB7Z8K6 153 aa11.53□□□□□ -0.56
USP40-214ENST00000483519 CLDN34H7C241 214 aa11.53□□□□□ -0.56
USP40-214ENST00000483519 MSR1P21757 451 aa11.53□□□□□ -0.56
USP40-214ENST00000483519 BAXQ07812 192 aa11.53□□□□□ -0.56
USP40-214ENST00000483519 PLPPR5Q32ZL2 321 aa11.53□□□□□ -0.56
USP40-214ENST00000483519 FAM185AQ8N0U4 392 aa11.53□□□□□ -0.56
USP40-214ENST00000483519 TMEM252Q8N6L7 170 aa11.53□□□□□ -0.56
USP40-214ENST00000483519 ABHD5Q8WTS1 349 aa11.53□□□□□ -0.56
USP40-214ENST00000483519 TMEM171Q8WVE6 324 aa11.53□□□□□ -0.56
USP40-214ENST00000483519 RCC1LQ96I51 464 aaKnown RBP11.53□□□□□ -0.56
USP40-214ENST00000483519 TP53RKQ96S44 253 aa11.53□□□□□ -0.56
USP40-214ENST00000483519 PITPNC1Q9UKF7 332 aa11.53□□□□□ -0.56
USP40-214ENST00000483519 PRUNE2Q8WUY3 3088 aa11.53□□□□□ -0.56
USP40-214ENST00000483519 C3orf85A0A1B0GTC6 90 aa11.53□□□□□ -0.56
USP40-214ENST00000483519 NKX2-6A6NCS4 301 aa11.53□□□□□ -0.56
USP40-214ENST00000483519 MKRN2OSH3BPM6 223 aa11.53□□□□□ -0.56
USP40-214ENST00000483519 SSSCA1O60232 199 aa11.53□□□□□ -0.56
USP40-214ENST00000483519 PAX1P15863 534 aa11.53□□□□□ -0.56
USP40-214ENST00000483519 RND2P52198 227 aa11.53□□□□□ -0.56
USP40-214ENST00000483519 RAB4BP61018 213 aa11.53□□□□□ -0.56
USP40-214ENST00000483519 CMTM1Q8IZ96 169 aa11.53□□□□□ -0.56
USP40-214ENST00000483519 HIST1H2BLQ99880 126 aa11.53□□□□□ -0.56
USP40-214ENST00000483519 PTRH2Q9Y3E5 179 aaKnown RBP11.53□□□□□ -0.56
USP40-214ENST00000483519 ONECUT2O95948 504 aa11.52□□□□□ -0.56
USP40-214ENST00000483519 CEACAM1P13688 526 aa11.52□□□□□ -0.56
USP40-214ENST00000483519 NDUFB7P17568 137 aa11.52□□□□□ -0.56
USP40-214ENST00000483519 CD200P41217 278 aa11.52□□□□□ -0.56
USP40-214ENST00000483519 NOVA1P51513 510 aaKnown RBP11.52□□□□□ -0.56
USP40-214ENST00000483519 H3F3AP84243 136 aa11.52□□□□□ -0.56
USP40-214ENST00000483519 CPEB2Q7Z5Q1 589 aaKnown RBP11.52□□□□□ -0.56
USP40-214ENST00000483519 ZNF100Q8IYN0 542 aa11.52□□□□□ -0.56
USP40-214ENST00000483519 SUMF1Q8NBK3 374 aa11.52□□□□□ -0.56
USP40-214ENST00000483519 LURAP1Q96LR2 239 aa11.52□□□□□ -0.56
USP40-214ENST00000483519 TMUB1Q9BVT8 246 aa11.52□□□□□ -0.56
USP40-214ENST00000483519 DKKL1Q9UK85 242 aa11.52□□□□□ -0.56
USP40-214ENST00000483519 COL6A3P12111 3177 aa11.52□□□□□ -0.57
USP40-214ENST00000483519 EXPH5Q8NEV8 1989 aa11.52□□□□□ -0.57
USP40-214ENST00000483519 PRR33A8MZF0 331 aa11.52□□□□□ -0.57
USP40-214ENST00000483519 MPPED1O15442 326 aa11.52□□□□□ -0.57
USP40-214ENST00000483519 ANGPTL7O43827 346 aa11.52□□□□□ -0.57
USP40-214ENST00000483519 CYB5R3P00387 301 aaPredicted RBP11.52□□□□□ -0.57
USP40-214ENST00000483519 PDGFBP01127 241 aaPredicted RBP11.52□□□□□ -0.57
USP40-214ENST00000483519 FGF7P21781 194 aa11.52□□□□□ -0.57
USP40-214ENST00000483519 IL2RGP31785 369 aa11.52□□□□□ -0.57
USP40-214ENST00000483519 C1orf189Q5VU69 101 aa11.52□□□□□ -0.57
USP40-214ENST00000483519 LHFPL2Q6ZUX7 228 aa11.52□□□□□ -0.57
USP40-214ENST00000483519 SYT13Q7L8C5 426 aa11.52□□□□□ -0.57
USP40-214ENST00000483519 OR5L2Q8NGL0 311 aa11.52□□□□□ -0.57
USP40-214ENST00000483519 OR1L3Q8NH93 324 aa11.52□□□□□ -0.57
USP40-214ENST00000483519 THAP3Q8WTV1 239 aaPredicted RBP11.52□□□□□ -0.57
USP40-214ENST00000483519 TMEM222Q9H0R3 208 aa11.52□□□□□ -0.57
USP40-214ENST00000483519 GPR173Q9NS66 373 aa11.52□□□□□ -0.57
USP40-214ENST00000483519 BDP1A6H8Y1 2624 aa11.52□□□□□ -0.57
USP40-214ENST00000483519 LOC102723971A0A1B0GUV8 181 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 A0A1W2PNR3 127 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 TERTO14746 1132 aaKnown RBP11.51□□□□□ -0.57
USP40-214ENST00000483519 OPN1LWP04000 364 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 DYNLT3P51808 116 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 SPCS3P61009 180 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 FOXO1Q12778 655 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 CNN3Q15417 329 aaKnown RBP11.51□□□□□ -0.57
USP40-214ENST00000483519 UNQ6494/PRO21346Q6UXR6 183 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 P4HA3Q7Z4N8 544 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 ZNF695Q8IW36 515 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 DMRTC2Q8IXT2 367 aaPredicted RBP11.51□□□□□ -0.57
USP40-214ENST00000483519 POC1BQ8TC44 478 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 LMX1AQ8TE12 382 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 A0A087WZY1 265 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 IGHV3-20A0A0C4DH32 117 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 A0A1B0GX78 115 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 C9J4A7 227 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 M0R135 149 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 DVL1O14640 695 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 GEMIN2O14893 280 aaKnown RBP11.51□□□□□ -0.57
USP40-214ENST00000483519 SPRY1O43609 319 aaPredicted RBP11.51□□□□□ -0.57
USP40-214ENST00000483519 MMP9P14780 707 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 PNLIPP16233 465 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 AADACP22760 399 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 OR8B8Q15620 311 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 NAXEQ8NCW5 288 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 ZNF799Q96GE5 643 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 SNX22Q96L94 193 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 NOL4LQ96MY1 436 aaPredicted RBP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms