RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 FAM25CB3EWG5 89 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 FAM25GB3EWG6 89 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 RNF223E7ERA6 249 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 F5H0A9 414 aaPredicted RBP10.18□□□□□ -0.78
SDC1-206ENST00000482879 K7N7A8 449 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 RAB27BO00194 218 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 HSPB6O14558 160 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 DVL1O14640 695 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 PSPNO60542 156 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 ZNF737O75373 536 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 IGHV2-5P01817 119 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 APOA1P02647 267 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 TK1P04183 234 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 EIF4EP06730 217 aaKnown RBP10.18□□□□□ -0.78
SDC1-206ENST00000482879 HEXAP06865 529 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 ELK1P19419 428 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 TMEM50BP56557 158 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 MOGAT2Q3SYC2 334 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 LRRC10Q5BKY1 277 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 RAB12Q6IQ22 244 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 BRICD5Q6PL45 260 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 C17orf107Q6ZR85 190 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 Q6ZTK2 550 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 BPIFB2Q8N4F0 458 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 OR4S1Q8NGB4 309 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 OR5D13Q8NGL4 314 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 OR10R2Q8NGX6 335 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 PPP1R35Q8TAP8 253 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 NEK7Q8TDX7 302 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 DPCDQ9BVM2 203 aaPredicted RBP10.18□□□□□ -0.78
SDC1-206ENST00000482879 CHST6Q9GZX3 395 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 FAM234AQ9H0X4 552 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 PPA2Q9H2U2 334 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 MMP27Q9H306 513 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 DIABLOQ9NR28 239 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 PLEKHJ1Q9NW61 149 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 SLC25A10Q9UBX3 287 aaPredicted RBP10.18□□□□□ -0.78
SDC1-206ENST00000482879 ADAM30Q9UKF2 790 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 A3GALT2U3KPV4 340 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 CREBBPQ92793 2442 aa10.18□□□□□ -0.78
SDC1-206ENST00000482879 ABCA2Q9BZC7 2435 aa10.17□□□□□ -0.78
SDC1-206ENST00000482879 ITPR3Q14573 2671 aa10.17□□□□□ -0.78
SDC1-206ENST00000482879 A0A096LNT2 108 aa10.17□□□□□ -0.78
SDC1-206ENST00000482879 FOXI3A8MTJ6 420 aaPredicted RBP10.17□□□□□ -0.78
SDC1-206ENST00000482879 MCRIP1C9JLW8 97 aa10.17□□□□□ -0.78
SDC1-206ENST00000482879 SCGNO76038 276 aa10.17□□□□□ -0.78
SDC1-206ENST00000482879 NDUFB7P17568 137 aa10.17□□□□□ -0.78
SDC1-206ENST00000482879 CDK2P24941 298 aa10.17□□□□□ -0.78
SDC1-206ENST00000482879 CHATP28329 748 aa10.17□□□□□ -0.78
SDC1-206ENST00000482879 IL2RGP31785 369 aa10.17□□□□□ -0.78
SDC1-206ENST00000482879 OR3A1P47881 315 aa10.17□□□□□ -0.78
SDC1-206ENST00000482879 SEC61A1P61619 476 aaKnown RBP10.17□□□□□ -0.78
SDC1-206ENST00000482879 LOXL1Q08397 574 aaPredicted RBP10.17□□□□□ -0.78
SDC1-206ENST00000482879 RBM39Q14498 530 aaKnown RBP10.17□□□□□ -0.78
SDC1-206ENST00000482879 GRK1Q15835 563 aa10.17□□□□□ -0.78
SDC1-206ENST00000482879 WDR25Q64LD2 544 aaPredicted RBP10.17□□□□□ -0.78
SDC1-206ENST00000482879 ZNF841Q6ZN19 808 aa10.17□□□□□ -0.78
SDC1-206ENST00000482879 C6orf201Q7Z4U5 140 aa10.17□□□□□ -0.78
SDC1-206ENST00000482879 FGFRL1Q8N441 504 aa10.17□□□□□ -0.78
SDC1-206ENST00000482879 DTX3Q8N9I9 347 aa10.17□□□□□ -0.78
SDC1-206ENST00000482879 ST8SIA4Q92187 359 aa10.17□□□□□ -0.78
SDC1-206ENST00000482879 RAB3CQ96E17 227 aa10.17□□□□□ -0.78
SDC1-206ENST00000482879 ARHGAP5-AS1Q96IT6 56 aa10.17□□□□□ -0.78
SDC1-206ENST00000482879 FAAP24Q9BTP7 215 aa10.17□□□□□ -0.78
SDC1-206ENST00000482879 PECRQ9BY49 303 aa10.17□□□□□ -0.78
SDC1-206ENST00000482879 SHARPINQ9H0F6 387 aa10.17□□□□□ -0.78
SDC1-206ENST00000482879 MIXL1Q9H2W2 232 aa10.17□□□□□ -0.78
SDC1-206ENST00000482879 RCC2Q9P258 522 aaKnown RBP10.17□□□□□ -0.78
SDC1-206ENST00000482879 CLN8Q9UBY8 286 aa10.17□□□□□ -0.78
SDC1-206ENST00000482879 ABCA1O95477 2261 aa10.17□□□□□ -0.78
SDC1-206ENST00000482879 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.16□□□□□ -0.781e-7■■□□□ 12.7
SDC1-206ENST00000482879 TRAV18A0A075B6X5 111 aa10.16□□□□□ -0.78
SDC1-206ENST00000482879 A0A0A6YYH2 397 aa10.16□□□□□ -0.78
SDC1-206ENST00000482879 UBE2QL1A1L167 161 aa10.16□□□□□ -0.78
SDC1-206ENST00000482879 A6NJ64 397 aa10.16□□□□□ -0.78
SDC1-206ENST00000482879 MGST3O14880 152 aa10.16□□□□□ -0.78
SDC1-206ENST00000482879 FCN3O75636 299 aa10.16□□□□□ -0.78
SDC1-206ENST00000482879 GLAP06280 429 aa10.16□□□□□ -0.78
SDC1-206ENST00000482879 S100A5P33763 92 aa10.16□□□□□ -0.78
SDC1-206ENST00000482879 NPY4RP50391 375 aa10.16□□□□□ -0.78
SDC1-206ENST00000482879 GNB2P62879 340 aa10.16□□□□□ -0.78
SDC1-206ENST00000482879 CDNFQ49AH0 187 aa10.16□□□□□ -0.78
SDC1-206ENST00000482879 ESCO2Q56NI9 601 aa10.16□□□□□ -0.78
SDC1-206ENST00000482879 PLAC9Q5JTB6 97 aa10.16□□□□□ -0.78
SDC1-206ENST00000482879 GDPD3Q7L5L3 318 aa10.16□□□□□ -0.78
SDC1-206ENST00000482879 RTN4RL2Q86UN3 420 aa10.16□□□□□ -0.78
SDC1-206ENST00000482879 LAX1Q8IWV1 398 aa10.16□□□□□ -0.78
SDC1-206ENST00000482879 IZUMO1Q8IYV9 350 aa10.16□□□□□ -0.78
SDC1-206ENST00000482879 OR8H2Q8N162 312 aa10.16□□□□□ -0.78
SDC1-206ENST00000482879 MAPK1IP1LQ8NDC0 245 aa10.16□□□□□ -0.78
SDC1-206ENST00000482879 CYYR1Q96J86 154 aa10.16□□□□□ -0.78
SDC1-206ENST00000482879 SULT4A1Q9BR01 284 aa10.16□□□□□ -0.78
SDC1-206ENST00000482879 SSBP3Q9BWW4 388 aaPredicted RBP10.16□□□□□ -0.78
SDC1-206ENST00000482879 ING3Q9NXR8 418 aa10.16□□□□□ -0.78
SDC1-206ENST00000482879 HSF4Q9ULV5 492 aa10.16□□□□□ -0.78
SDC1-206ENST00000482879 CSMD1Q96PZ7 3565 aa10.15□□□□□ -0.78
SDC1-206ENST00000482879 CYSRT1A8MQ03 144 aa10.15□□□□□ -0.78
SDC1-206ENST00000482879 FAM157AC9JC47 383 aa10.15□□□□□ -0.78
SDC1-206ENST00000482879 PHF1O43189 567 aaPredicted RBP10.15□□□□□ -0.78
SDC1-206ENST00000482879 XRCC3O43542 346 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms