RNA–Protein interactions for RNA: ENST00000479080.1

CHD3-210, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 519 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-210ENST00000479080 PDLIM4P50479 330 aa10.9□□□□□ -0.66
CHD3-210ENST00000479080 TMEM33P57088 247 aa10.9□□□□□ -0.66
CHD3-210ENST00000479080 SEC61A1P61619 476 aaKnown RBP10.9□□□□□ -0.66
CHD3-210ENST00000479080 SCN1BQ07699 218 aa10.9□□□□□ -0.66
CHD3-210ENST00000479080 CDNFQ49AH0 187 aa10.9□□□□□ -0.66
CHD3-210ENST00000479080 TMEM69Q5SWH9 247 aa10.9□□□□□ -0.66
CHD3-210ENST00000479080 RAB12Q6IQ22 244 aa10.9□□□□□ -0.66
CHD3-210ENST00000479080 ZNF841Q6ZN19 808 aa10.9□□□□□ -0.66
CHD3-210ENST00000479080 LRRC75A-AS1Q8N1F1 130 aa10.9□□□□□ -0.66
CHD3-210ENST00000479080 BPIFB2Q8N4F0 458 aa10.9□□□□□ -0.66
CHD3-210ENST00000479080 ZNRF1Q8ND25 227 aa10.9□□□□□ -0.66
CHD3-210ENST00000479080 NINJ1Q92982 152 aa10.9□□□□□ -0.66
CHD3-210ENST00000479080 RAB3CQ96E17 227 aa10.9□□□□□ -0.66
CHD3-210ENST00000479080 S100A16Q96FQ6 103 aaKnown RBP10.9□□□□□ -0.66
CHD3-210ENST00000479080 FAAP24Q9BTP7 215 aa10.9□□□□□ -0.66
CHD3-210ENST00000479080 SRRQ9GZT4 340 aa10.9□□□□□ -0.66
CHD3-210ENST00000479080 CHST6Q9GZX3 395 aa10.9□□□□□ -0.66
CHD3-210ENST00000479080 PPA2Q9H2U2 334 aa10.9□□□□□ -0.66
CHD3-210ENST00000479080 BARX1Q9HBU1 254 aaPredicted RBP10.9□□□□□ -0.66
CHD3-210ENST00000479080 MYOZ1Q9NP98 299 aaPredicted RBP10.9□□□□□ -0.66
CHD3-210ENST00000479080 AK3Q9UIJ7 227 aa10.9□□□□□ -0.66
CHD3-210ENST00000479080 ADAM30Q9UKF2 790 aa10.9□□□□□ -0.66
CHD3-210ENST00000479080 HSF4Q9ULV5 492 aa10.9□□□□□ -0.66
CHD3-210ENST00000479080 UBE2QL1A1L167 161 aa10.89□□□□□ -0.67
CHD3-210ENST00000479080 METTL21EPA6NDL7 271 aa10.89□□□□□ -0.67
CHD3-210ENST00000479080 SH2D1BO14796 132 aa10.89□□□□□ -0.67
CHD3-210ENST00000479080 DEGS1O15121 323 aa10.89□□□□□ -0.67
CHD3-210ENST00000479080 MELTFP08582 738 aa10.89□□□□□ -0.67
CHD3-210ENST00000479080 MDH2P40926 338 aaKnown RBP10.89□□□□□ -0.67
CHD3-210ENST00000479080 RANBP1P43487 201 aa10.89□□□□□ -0.67
CHD3-210ENST00000479080 GABRA2P47869 451 aa10.89□□□□□ -0.67
CHD3-210ENST00000479080 DGCR2P98153 550 aa10.89□□□□□ -0.67
CHD3-210ENST00000479080 TMEM155Q4W5P6 130 aa10.89□□□□□ -0.67
CHD3-210ENST00000479080 ATAD3CQ5T2N8 411 aa10.89□□□□□ -0.67
CHD3-210ENST00000479080 RSBN1Q5VWQ0 802 aaPredicted RBP10.89□□□□□ -0.67
CHD3-210ENST00000479080 DCDC5Q6ZRR9 648 aa10.89□□□□□ -0.67
CHD3-210ENST00000479080 Q6ZTK2 550 aa10.89□□□□□ -0.67
CHD3-210ENST00000479080 TCF23Q7RTU1 214 aa10.89□□□□□ -0.67
CHD3-210ENST00000479080 C5orf24Q7Z6I8 188 aa10.89□□□□□ -0.67
CHD3-210ENST00000479080 SNX29P2Q8IUI4 249 aa10.89□□□□□ -0.67
CHD3-210ENST00000479080 GAPTQ8N292 157 aa10.89□□□□□ -0.67
CHD3-210ENST00000479080 CHST4Q8NCG5 386 aa10.89□□□□□ -0.67
CHD3-210ENST00000479080 NUDCD2Q8WVJ2 157 aa10.89□□□□□ -0.67
CHD3-210ENST00000479080 DPCDQ9BVM2 203 aaPredicted RBP10.89□□□□□ -0.67
CHD3-210ENST00000479080 KAAG1Q9UBP8 84 aa10.89□□□□□ -0.67
CHD3-210ENST00000479080 IGHV4-61A0A0C4DH41 118 aa10.88□□□□□ -0.67
CHD3-210ENST00000479080 FABP12A6NFH5 140 aa10.88□□□□□ -0.67
CHD3-210ENST00000479080 K7N7A8 449 aa10.88□□□□□ -0.67
CHD3-210ENST00000479080 ADAM20O43506 726 aa10.88□□□□□ -0.67
CHD3-210ENST00000479080 LANCL1O43813 399 aa10.88□□□□□ -0.67
CHD3-210ENST00000479080 S100A5P33763 92 aa10.88□□□□□ -0.67
CHD3-210ENST00000479080 LMO4P61968 165 aa10.88□□□□□ -0.67
CHD3-210ENST00000479080 ATXN7L3Q14CW9 347 aaPredicted RBP10.88□□□□□ -0.67
CHD3-210ENST00000479080 PAN3Q58A45 887 aaKnown RBP10.88□□□□□ -0.67
CHD3-210ENST00000479080 RNASE12Q5GAN4 147 aaKnown RBP10.88□□□□□ -0.67
CHD3-210ENST00000479080 SHEQ5VZ18 495 aa10.88□□□□□ -0.67
CHD3-210ENST00000479080 FIP1L1Q6UN15 594 aaKnown RBP10.88□□□□□ -0.67
CHD3-210ENST00000479080 FAM131AQ6UXB0 335 aa10.88□□□□□ -0.67
CHD3-210ENST00000479080 TPRX1Q8N7U7 411 aa10.88□□□□□ -0.67
CHD3-210ENST00000479080 CLDND2Q8NHS1 167 aa10.88□□□□□ -0.67
CHD3-210ENST00000479080 MRPL30Q8TCC3 161 aaKnown RBP10.88□□□□□ -0.67
CHD3-210ENST00000479080 RAB1CQ92928 201 aa10.88□□□□□ -0.67
CHD3-210ENST00000479080 DNTTIP1Q9H147 329 aa10.88□□□□□ -0.67
CHD3-210ENST00000479080 NARFLQ9H6Q4 476 aa10.88□□□□□ -0.67
CHD3-210ENST00000479080 ZNF665Q9H7R5 613 aa10.88□□□□□ -0.67
CHD3-210ENST00000479080 DIABLOQ9NR28 239 aa10.88□□□□□ -0.67
CHD3-210ENST00000479080 ANAPC10Q9UM13 185 aa10.88□□□□□ -0.67
CHD3-210ENST00000479080 MRPS7Q9Y2R9 242 aaKnown RBP10.88□□□□□ -0.67
CHD3-210ENST00000479080 IGKV1D-8A0A087WSZ0 117 aa10.87□□□□□ -0.67
CHD3-210ENST00000479080 TRAV39A0A0B4J263 110 aa10.87□□□□□ -0.67
CHD3-210ENST00000479080 ISPDA4D126 451 aa10.87□□□□□ -0.67
CHD3-210ENST00000479080 J3QRK9 145 aa10.87□□□□□ -0.67
CHD3-210ENST00000479080 CA11O75493 328 aa10.87□□□□□ -0.67
CHD3-210ENST00000479080 SCGNO76038 276 aa10.87□□□□□ -0.67
CHD3-210ENST00000479080 NAPSAO96009 420 aa10.87□□□□□ -0.67
CHD3-210ENST00000479080 TK1P04183 234 aa10.87□□□□□ -0.67
CHD3-210ENST00000479080 GSTP1P09211 210 aaKnown RBP10.87□□□□□ -0.67
CHD3-210ENST00000479080 WNT2P09544 360 aa10.87□□□□□ -0.67
CHD3-210ENST00000479080 IL2RGP31785 369 aa10.87□□□□□ -0.67
CHD3-210ENST00000479080 NR4A2P43354 598 aa10.87□□□□□ -0.67
CHD3-210ENST00000479080 IL18Q14116 193 aa10.87□□□□□ -0.67
CHD3-210ENST00000479080 CLEC12BQ2HXU8 276 aa10.87□□□□□ -0.67
CHD3-210ENST00000479080 HACD4Q5VWC8 232 aa10.87□□□□□ -0.67
CHD3-210ENST00000479080 PYHIN1Q6K0P9 492 aa10.87□□□□□ -0.67
CHD3-210ENST00000479080 ZNF561Q8N587 486 aa10.87□□□□□ -0.67
CHD3-210ENST00000479080 ASCC1Q8N9N2 400 aaKnown RBP10.87□□□□□ -0.67
CHD3-210ENST00000479080 OR52I2Q8NH67 350 aa10.87□□□□□ -0.67
CHD3-210ENST00000479080 GPX8Q8TED1 209 aa10.87□□□□□ -0.67
CHD3-210ENST00000479080 FAM168AQ92567 244 aa10.87□□□□□ -0.67
CHD3-210ENST00000479080 TRIM63Q969Q1 353 aa10.87□□□□□ -0.67
CHD3-210ENST00000479080 SNX22Q96L94 193 aa10.87□□□□□ -0.67
CHD3-210ENST00000479080 NEDD4LQ96PU5 975 aa10.87□□□□□ -0.67
CHD3-210ENST00000479080 DCTN5Q9BTE1 182 aa10.87□□□□□ -0.67
CHD3-210ENST00000479080 PATZ1Q9HBE1 687 aaKnown RBP10.87□□□□□ -0.67
CHD3-210ENST00000479080 PLEKHJ1Q9NW61 149 aa10.87□□□□□ -0.67
CHD3-210ENST00000479080 MEIS3P1A6NDR6 274 aa10.86□□□□□ -0.67
CHD3-210ENST00000479080 NKX6-3A6NJ46 265 aa10.86□□□□□ -0.67
CHD3-210ENST00000479080 DVL1O14640 695 aa10.86□□□□□ -0.67
CHD3-210ENST00000479080 CTDSPLO15194 276 aa10.86□□□□□ -0.67
CHD3-210ENST00000479080 TMPRSS2O15393 492 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms