RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 SIRPB1O00241 398 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 OGG1O15527 345 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 WBP4O75554 376 aaKnown RBP5.87□□□□□ -1.47
PTPRF-210ENST00000463041 CD2P06729 351 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 LIMS3P0CW19 117 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 LIMS4P0CW20 117 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 ZNF44P15621 663 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 RAB3AP20336 220 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 CD34P28906 385 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 BRS3P32247 399 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 GLIPR1P48060 266 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 PRRX1P54821 245 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 SNU13P55769 128 aaKnown RBP5.87□□□□□ -1.47
PTPRF-210ENST00000463041 ZP1P60852 638 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 BDH1Q02338 343 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 AESQ08117 197 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 ZSCAN26Q16670 478 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 PDLIM3Q53GG5 364 aaPredicted RBP5.87□□□□□ -1.47
PTPRF-210ENST00000463041 KRBOX4Q5JUW0 171 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 ZNF691Q5VV52 312 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 ZNF529Q6P280 563 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 CCBE1Q6UXH8 406 aaPredicted RBP5.87□□□□□ -1.47
PTPRF-210ENST00000463041 ASCL4Q6XD76 172 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 C16orf82Q7Z2V1 217 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 RNF144BQ7Z419 303 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 ZNF565Q8N9K5 539 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 OR4D6Q8NGJ1 314 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 OR51T1Q8NGJ9 327 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 OR5D18Q8NGL1 313 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 FAM110DQ8TAY7 271 aaPredicted RBP5.87□□□□□ -1.47
PTPRF-210ENST00000463041 NDNFQ8TB73 568 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 GPR148Q8TDV2 347 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 APH1BQ8WW43 257 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 STMN2Q93045 179 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 NKX3-1Q99801 234 aaPredicted RBP5.87□□□□□ -1.47
PTPRF-210ENST00000463041 PDCD1LG2Q9BQ51 273 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 BARHL1Q9BZE3 327 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 CHCHD3Q9NX63 227 aaKnown RBP5.87□□□□□ -1.47
PTPRF-210ENST00000463041 BABAM2Q9NXR7 383 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 SMPD3Q9NY59 655 aaPredicted RBP5.87□□□□□ -1.47
PTPRF-210ENST00000463041 OR6C3Q9NZP0 311 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 SIGLEC9Q9Y336 463 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 HILPDAQ9Y5L2 63 aa5.87□□□□□ -1.47
PTPRF-210ENST00000463041 PRKDCP78527 4128 aaKnown RBP5.86□□□□□ -1.47
PTPRF-210ENST00000463041 KBTBD11-OT1A0A1B0GTJ5 212 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 ODAMA1E959 279 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 MEGF11A6BM72 1044 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 ZNF729A6NN14 1252 aaPredicted RBP5.86□□□□□ -1.47
PTPRF-210ENST00000463041 LEUTXA8MZ59 168 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 F2RL2O00254 374 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 SLC33A1O00400 549 aaPredicted RBP5.86□□□□□ -1.47
PTPRF-210ENST00000463041 TOR1AO14656 332 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 CHST1O43916 411 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 MMP23AO75900 390 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 IGLV1-47P01700 117 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 CGB3P0DN86 165 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 CGB7P0DN87 165 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 VSIG10L2P0DP72 767 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 CDK2P24941 298 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 C21orf33P30042 268 aaPredicted RBP5.86□□□□□ -1.47
PTPRF-210ENST00000463041 CEACAM3P40198 252 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 PTGFRP43088 359 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 KCNJ3P48549 501 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 ETV1P50549 477 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 ARHGDIBP52566 201 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 GTF2A1P52655 376 aaPredicted RBP5.86□□□□□ -1.47
PTPRF-210ENST00000463041 SLC34A1Q06495 639 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 MED21Q13503 144 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 IL13RA2Q14627 380 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 CDK5R1Q15078 307 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 SMN1Q16637 294 aaKnown RBP5.86□□□□□ -1.47
PTPRF-210ENST00000463041 PLA1AQ53H76 456 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 SLC16A12Q6ZSM3 486 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 SATL1Q86VE3 508 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 DHRSXQ8N5I4 330 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 KLHDC1Q8N7A1 406 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 PACRGLQ8N7B6 248 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 SETD9Q8NE22 299 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 OR4P4Q8NGL7 312 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 TSEN15Q8WW01 171 aaKnown RBP5.86□□□□□ -1.47
PTPRF-210ENST00000463041 NR1H4Q96RI1 486 aaPredicted RBP5.86□□□□□ -1.47
PTPRF-210ENST00000463041 GPER1Q99527 375 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 ZNF702PQ9H963 129 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 TMEM138Q9NPI0 162 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 PCDHB16Q9NRJ7 776 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 SERTAD4Q9NUC0 356 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 FOXJ3Q9UPW0 622 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 ZNF281Q9Y2X9 895 aa5.86□□□□□ -1.47
PTPRF-210ENST00000463041 EXOSC1Q9Y3B2 195 aaKnown RBP5.86□□□□□ -1.47
PTPRF-210ENST00000463041 A0A087X0M5 115 aa5.85□□□□□ -1.47
PTPRF-210ENST00000463041 A0A1B0GX30 115 aa5.85□□□□□ -1.47
PTPRF-210ENST00000463041 OOSP1A8MZH6 123 aa5.85□□□□□ -1.47
PTPRF-210ENST00000463041 H0YJX3 145 aa5.85□□□□□ -1.47
PTPRF-210ENST00000463041 LY6LH3BQJ8 138 aa5.85□□□□□ -1.47
PTPRF-210ENST00000463041 BUB1B-PAK6H3BSN5 160 aa5.85□□□□□ -1.47
PTPRF-210ENST00000463041 PEX14O75381 377 aa5.85□□□□□ -1.47
PTPRF-210ENST00000463041 GPX5O75715 221 aa5.85□□□□□ -1.47
PTPRF-210ENST00000463041 TSPAN15O95858 294 aa5.85□□□□□ -1.47
PTPRF-210ENST00000463041 OPN1MWP04001 364 aa5.85□□□□□ -1.47
PTPRF-210ENST00000463041 OPN1MW2P0DN77 364 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms