RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 KRBOX4Q5JUW0 171 aa11.25□□□□□ -0.61
USP4-206ENST00000461553 LDLRAD2Q5SZI1 272 aa11.25□□□□□ -0.61
USP4-206ENST00000461553 ZNF691Q5VV52 312 aa11.25□□□□□ -0.61
USP4-206ENST00000461553 RNF144BQ7Z419 303 aa11.25□□□□□ -0.61
USP4-206ENST00000461553 RTN4RL2Q86UN3 420 aa11.25□□□□□ -0.61
USP4-206ENST00000461553 C11orf44Q8N8P7 122 aa11.25□□□□□ -0.61
USP4-206ENST00000461553 ZNF596Q8TC21 504 aa11.25□□□□□ -0.61
USP4-206ENST00000461553 GPER1Q99527 375 aa11.25□□□□□ -0.61
USP4-206ENST00000461553 ZNF649Q9BS31 505 aa11.25□□□□□ -0.61
USP4-206ENST00000461553 JAM3Q9BX67 310 aa11.25□□□□□ -0.61
USP4-206ENST00000461553 FAM192AQ9GZU8 254 aa11.25□□□□□ -0.61
USP4-206ENST00000461553 MRPS18AQ9NVS2 196 aaKnown RBP11.25□□□□□ -0.61
USP4-206ENST00000461553 TAS2R3Q9NYW6 316 aa11.25□□□□□ -0.61
USP4-206ENST00000461553 IRGMA1A4Y4 181 aa11.24□□□□□ -0.61
USP4-206ENST00000461553 ODAMA1E959 279 aa11.24□□□□□ -0.61
USP4-206ENST00000461553 FAM172BPA6NC97 362 aa11.24□□□□□ -0.61
USP4-206ENST00000461553 E9PI62 339 aa11.24□□□□□ -0.61
USP4-206ENST00000461553 H3BUI4 141 aa11.24□□□□□ -0.61
USP4-206ENST00000461553 SLC33A1O00400 549 aaPredicted RBP11.24□□□□□ -0.61
USP4-206ENST00000461553 FBXO24O75426 580 aa11.24□□□□□ -0.61
USP4-206ENST00000461553 ALDOBP05062 364 aa11.24□□□□□ -0.61
USP4-206ENST00000461553 LMO1P25800 156 aa11.24□□□□□ -0.61
USP4-206ENST00000461553 GLIPR1P48060 266 aa11.24□□□□□ -0.61
USP4-206ENST00000461553 AESQ08117 197 aa11.24□□□□□ -0.61
USP4-206ENST00000461553 CDK5R1Q15078 307 aa11.24□□□□□ -0.61
USP4-206ENST00000461553 HEPN1Q6WQI6 88 aa11.24□□□□□ -0.61
USP4-206ENST00000461553 TMPRSS11AQ6ZMR5 421 aa11.24□□□□□ -0.61
USP4-206ENST00000461553 OR4P4Q8NGL7 312 aa11.24□□□□□ -0.61
USP4-206ENST00000461553 PRSS22Q9GZN4 317 aa11.24□□□□□ -0.61
USP4-206ENST00000461553 ING3Q9NXR8 418 aa11.24□□□□□ -0.61
USP4-206ENST00000461553 A0A0G2JK05 382 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 H0YJX3 145 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 HSPB6O14558 160 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 DEGS1O15121 323 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 WBP4O75554 376 aaKnown RBP11.23□□□□□ -0.61
USP4-206ENST00000461553 MMP23AO75900 390 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 LIMS3P0CW19 117 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 LIMS4P0CW20 117 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 MYL12AP19105 171 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 GLP1RP43220 463 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 SOX2P48431 317 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 GTF2A1P52655 376 aaPredicted RBP11.23□□□□□ -0.61
USP4-206ENST00000461553 PPP3R1P63098 170 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 HABP2Q14520 560 aaPredicted RBP11.23□□□□□ -0.61
USP4-206ENST00000461553 SMN1Q16637 294 aaKnown RBP11.23□□□□□ -0.61
USP4-206ENST00000461553 CCDC58Q4VC31 144 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 PAN3Q58A45 887 aaKnown RBP11.23□□□□□ -0.61
USP4-206ENST00000461553 Q6P435 159 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 RPL22L1Q6P5R6 122 aaKnown RBP11.23□□□□□ -0.61
USP4-206ENST00000461553 CCBE1Q6UXH8 406 aaPredicted RBP11.23□□□□□ -0.61
USP4-206ENST00000461553 SATL1Q86VE3 508 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 Q8N2B8 174 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 ABHD12Q8N2K0 398 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 PXT1Q8NFP0 134 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 OR4D6Q8NGJ1 314 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 GPR148Q8TDV2 347 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 TNFAIP8L1Q8WVP5 186 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 CAPSLQ8WWF8 208 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 CFHR4Q92496 578 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 CORO2AQ92828 525 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 COQ2Q96H96 371 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 AKR1E2Q96JD6 320 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 FGF20Q9NP95 211 aaPredicted RBP11.23□□□□□ -0.61
USP4-206ENST00000461553 TAS2R4Q9NYW5 299 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 OR6C3Q9NZP0 311 aa11.23□□□□□ -0.61
USP4-206ENST00000461553 MEGF11A6BM72 1044 aa11.22□□□□□ -0.61
USP4-206ENST00000461553 ZNF729A6NN14 1252 aaPredicted RBP11.22□□□□□ -0.61
USP4-206ENST00000461553 GABRPO00591 440 aa11.22□□□□□ -0.61
USP4-206ENST00000461553 JUNBP17275 347 aaPredicted RBP11.22□□□□□ -0.61
USP4-206ENST00000461553 DCKP27707 260 aa11.22□□□□□ -0.61
USP4-206ENST00000461553 CEACAM3P40198 252 aa11.22□□□□□ -0.61
USP4-206ENST00000461553 VDAC2P45880 294 aaPredicted RBP11.22□□□□□ -0.61
USP4-206ENST00000461553 BDH1Q02338 343 aa11.22□□□□□ -0.61
USP4-206ENST00000461553 MED21Q13503 144 aa11.22□□□□□ -0.61
USP4-206ENST00000461553 IL13RA2Q14627 380 aa11.22□□□□□ -0.61
USP4-206ENST00000461553 RSU1Q15404 277 aa11.22□□□□□ -0.61
USP4-206ENST00000461553 ELP2Q6IA86 826 aa11.22□□□□□ -0.61
USP4-206ENST00000461553 BAIAP2L2Q6UXY1 529 aa11.22□□□□□ -0.61
USP4-206ENST00000461553 C16orf82Q7Z2V1 217 aa11.22□□□□□ -0.61
USP4-206ENST00000461553 SETD9Q8NE22 299 aa11.22□□□□□ -0.61
USP4-206ENST00000461553 OR51A2Q8NGJ7 313 aa11.22□□□□□ -0.61
USP4-206ENST00000461553 CNIH3Q8TBE1 160 aa11.22□□□□□ -0.61
USP4-206ENST00000461553 CYGBQ8WWM9 190 aa11.22□□□□□ -0.61
USP4-206ENST00000461553 RGP1Q92546 391 aaPredicted RBP11.22□□□□□ -0.61
USP4-206ENST00000461553 TMEM106AQ96A25 262 aa11.22□□□□□ -0.61
USP4-206ENST00000461553 CREB3L1Q96BA8 519 aa11.22□□□□□ -0.61
USP4-206ENST00000461553 NR1H4Q96RI1 486 aaPredicted RBP11.22□□□□□ -0.61
USP4-206ENST00000461553 PPIL3Q9H2H8 161 aaKnown RBP11.22□□□□□ -0.61
USP4-206ENST00000461553 ZNF286AQ9HBT8 521 aa11.22□□□□□ -0.61
USP4-206ENST00000461553 SERTAD4Q9NUC0 356 aa11.22□□□□□ -0.61
USP4-206ENST00000461553 DPM3Q9P2X0 92 aa11.22□□□□□ -0.61
USP4-206ENST00000461553 NOTCH3Q9UM47 2321 aa11.22□□□□□ -0.61
USP4-206ENST00000461553 LEUTXA8MZ59 168 aa11.21□□□□□ -0.61
USP4-206ENST00000461553 TOR1AO14656 332 aa11.21□□□□□ -0.61
USP4-206ENST00000461553 CD34P28906 385 aa11.21□□□□□ -0.61
USP4-206ENST00000461553 BRS3P32247 399 aa11.21□□□□□ -0.61
USP4-206ENST00000461553 HLA-DRB5Q30154 266 aa11.21□□□□□ -0.61
USP4-206ENST00000461553 OR2G6Q5TZ20 316 aa11.21□□□□□ -0.61
USP4-206ENST00000461553 XAF1Q6GPH4 301 aa11.21□□□□□ -0.61
USP4-206ENST00000461553 ZNF529Q6P280 563 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms