RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 FABP5Q01469 135 aa16.35■□□□□ 0.21
COL9A3-202ENST00000452372 MEF2CQ06413 473 aaPredicted RBP16.35■□□□□ 0.21
COL9A3-202ENST00000452372 KCTD21Q4G0X4 260 aa16.35■□□□□ 0.21
COL9A3-202ENST00000452372 NHLRC3Q5JS37 347 aa16.35■□□□□ 0.21
COL9A3-202ENST00000452372 GLIPR1L1Q6UWM5 242 aa16.35■□□□□ 0.21
COL9A3-202ENST00000452372 BRD3OSQ6XYD6 125 aa16.35■□□□□ 0.21
COL9A3-202ENST00000452372 OR4D6Q8NGJ1 314 aa16.35■□□□□ 0.21
COL9A3-202ENST00000452372 FCGR1BQ92637 280 aa16.35■□□□□ 0.21
COL9A3-202ENST00000452372 TNFRSF14Q92956 283 aa16.35■□□□□ 0.21
COL9A3-202ENST00000452372 FOXRED1Q96CU9 486 aaPredicted RBP16.35■□□□□ 0.21
COL9A3-202ENST00000452372 SIRT7Q9NRC8 400 aa16.35■□□□□ 0.21
COL9A3-202ENST00000452372 ST3GAL6Q9Y274 331 aa16.35■□□□□ 0.21
COL9A3-202ENST00000452372 IGHV1-69DA0A0B4J2H0 117 aa16.34■□□□□ 0.21
COL9A3-202ENST00000452372 ARL6IP5O75915 188 aa16.34■□□□□ 0.21
COL9A3-202ENST00000452372 IGHV1-69P01742 117 aa16.34■□□□□ 0.21
COL9A3-202ENST00000452372 SERPINA2P20848 420 aa16.34■□□□□ 0.21
COL9A3-202ENST00000452372 HILS1P60008 231 aa16.34■□□□□ 0.21
COL9A3-202ENST00000452372 EDDM3AQ14507 147 aa16.34■□□□□ 0.21
COL9A3-202ENST00000452372 ZNF273Q14593 569 aa16.34■□□□□ 0.21
COL9A3-202ENST00000452372 PIGYQ3MUY2 71 aa16.34■□□□□ 0.21
COL9A3-202ENST00000452372 SLC22A6Q4U2R8 563 aa16.34■□□□□ 0.21
COL9A3-202ENST00000452372 GLT8D1Q68CQ7 371 aa16.34■□□□□ 0.21
COL9A3-202ENST00000452372 C11orf42Q8N5U0 333 aa16.34■□□□□ 0.21
COL9A3-202ENST00000452372 C1orf147Q96MC9 270 aaPredicted RBP16.34■□□□□ 0.21
COL9A3-202ENST00000452372 SLITRK2Q9H156 845 aa16.34■□□□□ 0.21
COL9A3-202ENST00000452372 NDUFB11Q9NX14 153 aa16.34■□□□□ 0.21
COL9A3-202ENST00000452372 SOX21Q9Y651 276 aaPredicted RBP16.34■□□□□ 0.21
COL9A3-202ENST00000452372 KIAA2026Q5HYC2 2103 aa16.33■□□□□ 0.21
COL9A3-202ENST00000452372 hCG_1809904A0A1W2PP81 198 aa16.33■□□□□ 0.2
COL9A3-202ENST00000452372 A0A1W2PPE2 198 aa16.33■□□□□ 0.2
COL9A3-202ENST00000452372 A0A1W2PR64 198 aa16.33■□□□□ 0.2
COL9A3-202ENST00000452372 A0A1W2PRV1 198 aa16.33■□□□□ 0.2
COL9A3-202ENST00000452372 hADV38S2A0JD32 116 aa16.33■□□□□ 0.2
COL9A3-202ENST00000452372 RNASEK-C17orf49H0YIS7 233 aa16.33■□□□□ 0.2
COL9A3-202ENST00000452372 CSN2P05814 226 aa16.33■□□□□ 0.2
COL9A3-202ENST00000452372 GTF2F2P13984 249 aa16.33■□□□□ 0.2
COL9A3-202ENST00000452372 CFPP27918 469 aa16.33■□□□□ 0.2
COL9A3-202ENST00000452372 DLX6P56179 175 aa16.33■□□□□ 0.2
COL9A3-202ENST00000452372 RBM11P57052 281 aaKnown RBP16.33■□□□□ 0.2
COL9A3-202ENST00000452372 C1orf100Q5SVJ3 147 aa16.33■□□□□ 0.2
COL9A3-202ENST00000452372 RUSC1-AS1Q66K80 236 aa16.33■□□□□ 0.2
COL9A3-202ENST00000452372 AWAT2Q6E213 333 aa16.33■□□□□ 0.2
COL9A3-202ENST00000452372 TPRX1Q8N7U7 411 aa16.33■□□□□ 0.2
COL9A3-202ENST00000452372 SIGLECL1Q8N7X8 197 aa16.33■□□□□ 0.2
COL9A3-202ENST00000452372 MRPS24Q96EL2 167 aaKnown RBP16.33■□□□□ 0.2
COL9A3-202ENST00000452372 JMJD8Q96S16 334 aa16.33■□□□□ 0.2
COL9A3-202ENST00000452372 PPA2Q9H2U2 334 aa16.33■□□□□ 0.2
COL9A3-202ENST00000452372 IFT22Q9H7X7 185 aa16.33■□□□□ 0.2
COL9A3-202ENST00000452372 GHRLQ9UBU3 117 aa16.33■□□□□ 0.2
COL9A3-202ENST00000452372 TRAV24A0A0B4J272 114 aa16.32■□□□□ 0.2
COL9A3-202ENST00000452372 A0A1W2PP11 408 aa16.32■□□□□ 0.2
COL9A3-202ENST00000452372 FUOMA2VDF0 154 aa16.32■□□□□ 0.2
COL9A3-202ENST00000452372 C17orf98A8MV24 154 aa16.32■□□□□ 0.2
COL9A3-202ENST00000452372 CCRL2O00421 344 aa16.32■□□□□ 0.2
COL9A3-202ENST00000452372 ZNF728P0DKX0 622 aa16.32■□□□□ 0.2
COL9A3-202ENST00000452372 CCL3L1P16619 93 aa16.32■□□□□ 0.2
COL9A3-202ENST00000452372 PSMB9P28065 219 aa16.32■□□□□ 0.2
COL9A3-202ENST00000452372 COMPP49747 757 aaPredicted RBP16.32■□□□□ 0.2
COL9A3-202ENST00000452372 DLX1P56177 255 aa16.32■□□□□ 0.2
COL9A3-202ENST00000452372 P2RX3P56373 397 aa16.32■□□□□ 0.2
COL9A3-202ENST00000452372 GUCA2AQ02747 115 aa16.32■□□□□ 0.2
COL9A3-202ENST00000452372 AESQ08117 197 aa16.32■□□□□ 0.2
COL9A3-202ENST00000452372 NCR3LG1Q68D85 454 aa16.32■□□□□ 0.2
COL9A3-202ENST00000452372 CD200R1LQ6Q8B3 271 aa16.32■□□□□ 0.2
COL9A3-202ENST00000452372 RBMS3Q6XE24 437 aaKnown RBP16.32■□□□□ 0.2
COL9A3-202ENST00000452372 LINC00596Q86U02 117 aa16.32■□□□□ 0.2
COL9A3-202ENST00000452372 PDZD9Q8IXQ8 264 aa16.32■□□□□ 0.2
COL9A3-202ENST00000452372 FAM216AQ8WUB2 273 aa16.32■□□□□ 0.2
COL9A3-202ENST00000452372 ZNF48Q96MX3 618 aaPredicted RBP16.32■□□□□ 0.2
COL9A3-202ENST00000452372 LINC00312Q9Y6C7 94 aa16.32■□□□□ 0.2
COL9A3-202ENST00000452372 TRDV1A0A1B0GX56 115 aa16.31■□□□□ 0.2
COL9A3-202ENST00000452372 TMEM89A2RUT3 159 aa16.31■□□□□ 0.2
COL9A3-202ENST00000452372 GEMIN2O14893 280 aaKnown RBP16.31■□□□□ 0.2
COL9A3-202ENST00000452372 CALRP27797 417 aaKnown RBP16.31■□□□□ 0.2
COL9A3-202ENST00000452372 UBE2E1P51965 193 aa16.31■□□□□ 0.2
COL9A3-202ENST00000452372 PRB3Q04118 309 aaPredicted RBP16.31■□□□□ 0.2
COL9A3-202ENST00000452372 PAN3Q58A45 887 aaKnown RBP16.31■□□□□ 0.2
COL9A3-202ENST00000452372 C12orf54Q6X4T0 127 aa16.31■□□□□ 0.2
COL9A3-202ENST00000452372 TCF23Q7RTU1 214 aa16.31■□□□□ 0.2
COL9A3-202ENST00000452372 PRDM13Q9H4Q3 707 aa16.31■□□□□ 0.2
COL9A3-202ENST00000452372 ESM1Q9NQ30 184 aa16.31■□□□□ 0.2
COL9A3-202ENST00000452372 MEX3AA1L020 520 aaKnown RBP16.3■□□□□ 0.2
COL9A3-202ENST00000452372 OR7C1O76099 320 aaPredicted RBP16.3■□□□□ 0.2
COL9A3-202ENST00000452372 RBP4P02753 201 aa16.3■□□□□ 0.2
COL9A3-202ENST00000452372 UBBP0CG47 229 aa16.3■□□□□ 0.2
COL9A3-202ENST00000452372 GALP22466 123 aa16.3■□□□□ 0.2
COL9A3-202ENST00000452372 GLIPR1P48060 266 aa16.3■□□□□ 0.2
COL9A3-202ENST00000452372 ERVFRD-1P60508 538 aa16.3■□□□□ 0.2
COL9A3-202ENST00000452372 MPV17LQ2QL34 196 aa16.3■□□□□ 0.2
COL9A3-202ENST00000452372 DEFB112Q30KQ8 113 aa16.3■□□□□ 0.2
COL9A3-202ENST00000452372 SYT6Q5T7P8 510 aaPredicted RBP16.3■□□□□ 0.2
COL9A3-202ENST00000452372 HCP5Q6MZN7 132 aa16.3■□□□□ 0.2
COL9A3-202ENST00000452372 PIP4P2Q8N4L2 257 aa16.3■□□□□ 0.2
COL9A3-202ENST00000452372 ZDHHC22Q8N966 263 aa16.3■□□□□ 0.2
COL9A3-202ENST00000452372 COQ2Q96H96 371 aa16.3■□□□□ 0.2
COL9A3-202ENST00000452372 ZNF714Q96N38 554 aa16.3■□□□□ 0.2
COL9A3-202ENST00000452372 HEXA-AS1Q9H8Q6 139 aa16.3■□□□□ 0.2
COL9A3-202ENST00000452372 UBE2J1Q9Y385 318 aaPredicted RBP16.3■□□□□ 0.2
COL9A3-202ENST00000452372 MGAM2Q2M2H8 2515 aa16.3■□□□□ 0.2
COL9A3-202ENST00000452372 PKD1L1Q8TDX9 2849 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms