RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 OTPQ5XKR4 325 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 STEAP4Q687X5 459 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 FAM71E1Q6IPT2 247 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 C2orf66Q6UXQ4 117 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 CIARTQ8N365 385 aaPredicted RBP1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 LRRC25Q8N386 305 aaPredicted RBP1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 FAM71E2Q8N5Q1 922 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 OR2V1Q8NHB1 315 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 FMC1Q96HJ9 113 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 KIR2DL4Q99706 377 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 PRO0628Q9UI54 55 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 ERGIC3Q9Y282 383 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 NDUFAF1Q9Y375 327 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 LRP6O75581 1613 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 TTC3P53804 2025 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 EHBP1L1Q8N3D4 1523 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 MTCL1Q9Y4B5 1905 aaKnown RBP1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 IGLV1-36A0A0B4J1U3 117 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 DNAJC9-AS1A6NH13 148 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 LYPLA1O75608 230 aaPredicted RBP1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 KCNK2O95069 426 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 GABARAPO95166 117 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 GNB3P16520 340 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 PRTN3P24158 256 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 LINC01547P58512 204 aaPredicted RBP1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 NAA20P61599 178 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 FAM53BQ14153 422 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 SNRNP35Q16560 246 aaKnown RBP1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 ATP6AP1LQ52LC2 224 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 TCEAL5Q5H9L2 206 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 PLET1Q6UQ28 207 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 H2AFVQ71UI9 128 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 NPWQ8N729 165 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 SLC35G3Q8N808 338 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 SLC26A10Q8NG04 563 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 OR10J6PQ8NGY7 276 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 OR1P1Q8NH06 330 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 FLVCR1-AS1Q8TAF5 88 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 TCEAL3Q969E4 200 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 C12orf43Q96C57 262 aaKnown RBP1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 GPER1Q99527 375 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF2Q9BSG1 426 aaPredicted RBP1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF747Q9BV97 191 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 DDA1Q9BW61 102 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 SPNS1Q9H2V7 528 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 PARLQ9H300 379 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 VAX2Q9UIW0 290 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF780BQ9Y6R6 833 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 LAMC1P11047 1609 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 TULP4Q9NRJ4 1543 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 PCDH11XQ9BZA7 1347 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 PXDNLA1KZ92 1463 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 FYCO1Q9BQS8 1478 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 PRSS44E7EML9 344 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 SERPINA7P05543 415 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 CST2P09228 141 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 CD36P16671 472 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 HOXA5P20719 270 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 CD34P28906 385 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 LGALS7P47929 136 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 FGF8P55075 233 aaPredicted RBP1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 STPG1Q5TH74 334 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 FBXW9Q5XUX1 488 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 SLC36A1Q7Z2H8 476 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 CALHM3Q86XJ0 350 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 SLC35F6Q8N357 371 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 NATD1Q8N6N6 113 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF439Q8NDP4 499 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 GPR32P1Q8NGA4 272 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 TCEAL4Q96EI5 215 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 SMARCD1Q96GM5 515 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 TMEM138Q9NPI0 162 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 CISHQ9NSE2 258 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 ARMC1Q9NVT9 282 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 NYAP2Q9P242 653 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 GINS2Q9Y248 185 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF257Q9Y2Q1 563 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 HDGFL3Q9Y3E1 203 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 HSPB11Q9Y547 144 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 USP32Q8NFA0 1604 aa1.83□□□□□ -2.12
CCDC88A-208ENST00000444458 DNMT1P26358 1616 aaKnown RBP1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 IGLV7-46A0A075B6I9 117 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF233A6NK53 670 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 FOXH1O75593 365 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 TCN2P20062 427 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 S100A1P23297 94 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 REG1BP48304 166 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 CCL14Q16627 93 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 ZFP69Q49AA0 526 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 ADAMTSL4-AS1Q5T5F5 129 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 C9orf66Q5T8R8 295 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 KCTD16Q68DU8 428 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 FAM53AQ6NSI3 398 aaPredicted RBP1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 OPN5Q6U736 354 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 Q6ZPA2 131 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 LCNL1Q6ZST4 164 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 STRADAQ7RTN6 431 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 C6orf120Q7Z4R8 191 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 DHFR2Q86XF0 187 aa1.82□□□□□ -2.12
CCDC88A-208ENST00000444458 SMIM20Q8N5G0 67 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms